Browse Element(s) Details


OsAffx.16998.1.S1_at

Description tigr:9637.m01226
TID=OsAffx.16998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1506011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15050Os.49322.1.S1_at11/119+9095554..9100313Ent-kaurene synthase A, chloroplast precursor, putative, expressed
LOC_Os09g15060OsAffx.16998.1.S1_at11/119+9104916..9110419hypothetical protein
LOC_Os09g15060OsAffx.8934.1.S1_x_at1/119+9104916..9110419hypothetical protein
LOC_Os09g15070OsAffx.17706.1.S1_at11/119+9119450..9121145hypothetical protein
LOC_Os09g15080Os.27088.1.A1_x_at2/119+9126292..9129130retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g15080OsAffx.21673.1.S1_x_at1/119+9126292..9129130retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g15080Os.46012.2.S1_x_at1/119+9126292..9129130retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16998.1.S1_at--140--1151Chr09:9106608..9106632 (25 bp)
AGTCCTCCCGTCGTGGATAGGGTCG
LOC_Os09g15060
OsAffx.16998.1.S1_at--228--5871Chr09:9106700..9106720 (21 bp)
GAGCCTCCTACTACAGATGGTGGTA
LOC_Os09g15060
OsAffx.16998.1.S1_at--762--7731Chr09:9108450..9108474 (25 bp)
GGTGGTATGCCGAGAACGATCTTGA
LOC_Os09g15060
OsAffx.16998.1.S1_at--791--2211Chr09:9108492..9108516 (25 bp)
ACAAGAGCGCGTTAACGGCCTTCTT
LOC_Os09g15060
OsAffx.16998.1.S1_at--1135--9991Chr09:9108519..9108543 (25 bp)
TAGCGGCAGCAAACATCTTCGAACC
LOC_Os09g15060
OsAffx.16998.1.S1_at--14--2651Chr09:9108540..9108564 (25 bp)
AACCAAACCGAGCAGATGAGCGTCT
LOC_Os09g15060
OsAffx.16998.1.S1_at--638--691Chr09:9108555..9108579 (25 bp)
ATGAGCGTCTCCAGTGGCGGATCCA
LOC_Os09g15060
OsAffx.16998.1.S1_at--625--1291Chr09:9110250..9110274 (25 bp)
AGATGCAAAAACTAGCCCTGCTTGT
LOC_Os09g15060
OsAffx.16998.1.S1_at--740--1431Chr09:9110312..9110336 (25 bp)
AGAACATTCCTCGATGTCGTGAAGA
LOC_Os09g15060
OsAffx.16998.1.S1_at--791--1551Chr09:9110336..9110360 (25 bp)
AGCTTCTGCTACATTGCTCATTGCT
LOC_Os09g15060
OsAffx.16998.1.S1_at--581--3371Chr09:9110361..9110385 (25 bp)
CACCAGAGACAGTTGATCGCCATAT
LOC_Os09g15060
Target Sequence 
AGTCCTCCCGTCGTGGATAGGGTCGAGGATAGTAACAACGGCGGGGGCTCCTGAGCCCTCCCACGTGGATGGCGTTGAGG
ACGGCTGCTCCCGAGCCTCCTACTACAGATGGTGGTATGCCGAGAACGATCTTGAGGTATATGGTGTGACTCACAAGAGC
GCGTTAACGGCCTTCTTCCTAGCGGCAGCAAACATCTTCGAACCAAACCGAGCAGATGAGCGTCTCCAGTGGCGGATCCA
GGATTTGAGCGAAGGGTATTCAAAGTTGAAAAAAAAATCATACAGAACTCAAAAAATTGGACTAGGAAAATCATACAGGA
GTGGTAATGACATGTTTAAAGCCTTAAAGGAGGGTCCAGATCTGCAGAAAGCTGAGGAGCTAGACCGACAAGTGGACATG
GAGATGCAAAAACTAGCCCTGCTTGTTCTTCAGAATTATAATGCTGCTGACAGATTGTCCAATAGAACATTCCTCGATGT
CGTGAAGAGCTTCTGCTACATTGCTCATTGCTCACCAGAGACAGTTGATCGCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis