Browse Element(s) Details


OsAffx.17040.2.S1_x_at

Description tigr:9631.m01271
TID=OsAffx.17040.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1340011/11Zinc finger, C2H2 type family protein, expressed
LOC_Os01g515901/11hypothetical protein
LOC_Os02g310101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13370OsAffx.25081.1.S1_at10/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13370Os.6803.1.S1_at1/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13380Os.8333.1.S1_at11/113+7202883..7207233Endomembrane protein 70 containing protein, expressed
LOC_Os03g13390Os.48057.1.S1_at11/113+7208077..7210783NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os03g13400OsAffx.17040.2.S1_x_at11/113+7216429..7220531Zinc finger, C2H2 type family protein, expressed
LOC_Os03g13410NANA3+7232432..7232834hypothetical protein
LOC_Os03g13420Os.46012.2.S1_x_at7/113+7238577..7242644retrotransposon protein, putative, unclassified
LOC_Os03g13420Os.27088.1.A1_x_at5/113+7238577..7242644retrotransposon protein, putative, unclassified
LOC_Os03g13420Os.46012.3.S1_x_at3/113+7238577..7242644retrotransposon protein, putative, unclassified
LOC_Os03g13430OsAffx.16205.1.S1_at2/113+7243361..7246650hypothetical protein
LOC_Os03g13430OsAffx.15559.1.S1_at2/113+7243361..7246650hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17040.2.S1_x_at--576--5951Chr03:7216845..7216869 (25 bp)
GAGCAACACGCGACGACGATGACAA
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--726--1834Chr06:3096919..3096938 (20 bp)
ACGCGACGACGATGACAACGACGAA
NONE
OsAffx.17040.2.S1_x_at--595--671Chr03:7216827..7216851 (25 bp)
ATGACAACGACGAAGCTGCAGCTCT
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--894--2591Chr03:7216822..7216846 (25 bp)
AACGACGAAGCTGCAGCTCTCAATC
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--1145--3974Chr03:7216716..7216740 (25 bp)
CGGGAAGAGGTGAGGCGCGCGCTGG
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--170--4711Chr03:7216696..7216720 (25 bp)
GCTGGAGGAGAAGACCGCGGCGGAC
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--546--2951Chr03:7216575..7216599 (25 bp)
AAGGCGCTCGCGCTGCGGGACCACG
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--684--4471Chr03:7216544..7216568 (25 bp)
GCCTGATCGCGCAGGTGACCTGCCA
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--10--1051Chr03:7216532..7216556 (25 bp)
AGGTGACCTGCCACGCGTGCCGGCA
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--23--8251Chr03:7216511..7216535 (25 bp)
GGCAGCGCTCGCTCGCCGTGATGTC
LOC_Os03g13400
OsAffx.17040.2.S1_x_at--717--4231Chr03:7216496..7216520 (25 bp)
CCGTGATGTCCATGGCCGCCATCGA
LOC_Os03g13400
Target Sequence 
GAGCAACACGCGACGACGATGACAACGACGAAGCTGCAGCTCTCAATCGGCCCCGCCGCCGTCGTCGCCGCGGCGTCCGG
CGGCGGCGGCGCCTGCGCCGCGGCGGCAGGAGGGGAGGAGGAGCAGCAGCGGGAAGAGGTGAGGCGCGCGCTGGAGGAGA
AGACCGCGGCGGACGCGGCGCGGGAGCGGGCGCGCGAGGAGGCCGCGGCGGCGGAGCGCGCGCTGGAGGACGCCCGCCGC
GCGCGCCACCGGGCGCGCGGGGAGCTCGAGAAGGCGCTCGCGCTGCGGGACCACGCGGCGCGCCTGATCGCGCAGGTGAC
CTGCCACGCGTGCCGGCAGCGCTCGCTCGCCGTGATGTCCATGGCCGCCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17040.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis