Browse Element(s) Details


OsAffx.17045.1.S1_at

Description tigr:9636.m01754
TID=OsAffx.17045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1743011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17410Os.6810.1.S1_at10/118+10649176..10652201leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g17420Os.50704.1.S1_at11/118+10666462..10670855retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17420OsAffx.20303.1.S1_at9/118+10666462..10670855retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17420OsAffx.10048.1.S1_x_at1/118+10666462..10670855retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17430OsAffx.17045.1.S1_at11/118+10675101..10675583expressed protein
LOC_Os08g17440NANA8+10679022..10679764hypothetical protein
LOC_Os08g17450OsAffx.13772.1.S1_x_at1/118+10685821..10689675hypothetical protein
LOC_Os08g17450OsAffx.31069.1.S1_x_at1/118+10685821..10689675hypothetical protein
LOC_Os08g17460NANA8+10690418..10691465retrotransposon protein, putative, unclassified
LOC_Os08g17470NANA8+10692171..10694331retrotransposon protein, putative, unclassified
LOC_Os08g17480OsAffx.18275.1.S1_x_at1/118+10696536..10703008retrotransposon protein, putative, unclassified
LOC_Os08g17480OsAffx.22699.1.S1_x_at1/118+10696536..10703008retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17045.1.S1_at--1153--6691Chr08:10675182..10675206 (25 bp)
GTTCCCACGACCAGATCCGCCAGCG
LOC_Os08g17430
OsAffx.17045.1.S1_at--377--1291Chr08:10675274..10675298 (25 bp)
AGATCCGCACAGTTGCGCCCCTAAT
LOC_Os08g17430
OsAffx.17045.1.S1_at--922--9731Chr08:10675295..10675319 (25 bp)
TAATCCACCTTGCCCTGTTGGCCGA
LOC_Os08g17430
OsAffx.17045.1.S1_at--57--7571Chr08:10675469..10675493 (25 bp)
GGGCGCATGGGCTACGGTACAACAC
LOC_Os08g17430
OsAffx.17045.1.S1_at--791--4572Chr08:10675471..10675495 (25 bp)
GCGCATGGGCTACGGTACAACACCA
LOC_Os08g17430
OsAffx.17045.1.S1_at--22--3511Chr08:10675474..10675498 (25 bp)
CATGGGCTACGGTACAACACCACGG
LOC_Os08g17430
OsAffx.17045.1.S1_at--206--7691Chr08:10675505..10675529 (25 bp)
GGGTCATCAGCTACGCGTTGACGGC
LOC_Os08g17430
OsAffx.17045.1.S1_at--918--7811Chr08:10675506..10675530 (25 bp)
GGTCATCAGCTACGCGTTGACGGCA
LOC_Os08g17430
OsAffx.17045.1.S1_at--1083--391Chr08:10675510..10675534 (25 bp)
ATCAGCTACGCGTTGACGGCAGTGC
LOC_Os08g17430
OsAffx.17045.1.S1_at--1117--3711Chr08:10675515..10675539 (25 bp)
CTACGCGTTGACGGCAGTGCGGCAA
LOC_Os08g17430
OsAffx.17045.1.S1_at--1019--6651Chr08:10675521..10675545 (25 bp)
GTTGACGGCAGTGCGGCAACTGCGG
LOC_Os08g17430
Target Sequence 
GTTCCCACGACCAGATCCGCCAGCGCCACACGGGGGGACGGCCGTCGTCGGATCCGCACGGGCGACAGCCACCGCACCTC
CCCACTGCCGTCAGATCCGCACAGTTGCGCCCCTAATCCACCTTGCCCTGTTGGCCGAGCCCTCCACCGCCGTCAGGAGG
GAGGAGAGGGGAGAGGAGGAGTGGGGGAGAAGAGGAGGACGAGGCCGTTCCCGCTCGTCAGGTCGGGGCGGGGCAGCGGC
AGCGGCGGCGGCGGCAACTGCGGTGGAGGCAGCGCACGAGGTCCTGTGGGCGCATGGGCTACGGTACAACACCACGGTGG
ACGGGGTCATCAGCTACGCGTTGACGGCAGTGCGGCAACTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis