Browse Element(s) Details


OsAffx.17078.1.S1_at

Description tigr:9636.m01953
TID=OsAffx.17078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1984011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19800OsAffx.5878.1.S1_at10/118+11848173..11849990hypothetical protein
LOC_Os08g19810OsAffx.17076.1.S1_at11/118+11850564..11850839hypothetical protein
LOC_Os08g19820OsAffx.17077.1.S1_at11/118+11853158..11855233hypothetical protein
LOC_Os08g19830Os.36955.1.S1_at11/118+11863639..11873188Ubiquitin family protein, expressed
LOC_Os08g19840OsAffx.17078.1.S1_at11/118+11874016..11874782hypothetical protein
LOC_Os08g19850Os.19842.1.S1_at10/118+11881554..11891135Threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os08g19860NANA8+11894881..11897234hypothetical protein
LOC_Os08g19870OsAffx.29282.1.S1_at11/118+11897989..11900450hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17078.1.S1_at--48--7291Chr08:11874492..11874516 (25 bp)
GTGCCATCCCATCGCTGCTATGGAA
LOC_Os08g19840
OsAffx.17078.1.S1_at--92--551Chr08:11874497..11874521 (25 bp)
ATCCCATCGCTGCTATGGAAGCAAG
LOC_Os08g19840
OsAffx.17078.1.S1_at--513--3691Chr08:11874509..11874533 (25 bp)
CTATGGAAGCAAGGAGTCCGGGTCT
LOC_Os08g19840
OsAffx.17078.1.S1_at--656--3831Chr08:11874532..11874556 (25 bp)
CTGAGCCGTCGGAGCTGAAGCCTGA
LOC_Os08g19840
OsAffx.17078.1.S1_at--614--4011Chr08:11874538..11874562 (25 bp)
CGTCGGAGCTGAAGCCTGAGGCATC
LOC_Os08g19840
OsAffx.17078.1.S1_at--145--2671Chr08:11874549..11874573 (25 bp)
AAGCCTGAGGCATCCAAGCTGGAGA
LOC_Os08g19840
OsAffx.17078.1.S1_at--867--4971Chr08:11874558..11874582 (25 bp)
GCATCCAAGCTGGAGATGGACTCGA
LOC_Os08g19840
OsAffx.17078.1.S1_at--897--1312Chr08:11874571..11874595 (25 bp)
AGATGGACTCGATGAACGCGACGCG
LOC_Os08g19840
OsAffx.17078.1.S1_at--772--9151Chr08:11874639..11874663 (25 bp)
TGCGCGTGTGCGATGGCCACCGACT
LOC_Os08g19840
OsAffx.17078.1.S1_at--284--5531Chr08:11874676..11874700 (25 bp)
GAAACACGTGTAGGCACTTCGGCGT
LOC_Os08g19840
OsAffx.17078.1.S1_at--477--7431Chr08:11874683..11874707 (25 bp)
GTGTAGGCACTTCGGCGTCTCCACT
LOC_Os08g19840
Target Sequence 
GTGCCATCCCATCGCTGCTATGGAAGCAAGGAGTCCGGGTCTGAGCCGTCGGAGCTGAAGCCTGAGGCATCCAAGCTGGA
GATGGACTCGATGAACGCGACGCGGGCGAAGGGCGGCAACATGATGAAGCAGGAGGGGCACACGGCCTGCGCGTGTGCGA
TGGCCACCGACTCCGCCACCTGGGGAAACACGTGTAGGCACTTCGGCGTCTCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis