Browse Element(s) Details


OsAffx.17100.1.S1_at

Description tigr:9636.m02122
TID=OsAffx.17100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F21M12.28 gene product
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2172011/11MYST1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21700OsAffx.5891.1.S1_s_at11/118+12960165..12964786DCL protein, chloroplast precursor, putative, expressed
LOC_Os08g21710Os.40855.4.S1_x_at4/118+12969782..12971899hypothetical protein
LOC_Os08g21710Os.40360.1.S1_x_at1/118+12969782..12971899hypothetical protein
LOC_Os08g21720OsAffx.17100.1.S1_at11/118+12976544..12976962MYST1, putative
LOC_Os08g21740NANA8+12981981..12983647retrotransposon protein, putative, unclassified
LOC_Os08g21760Os.26760.1.A1_at11/118+12987359..12993517RER1C protein, putative, expressed
LOC_Os08g21760OsAffx.5892.1.S1_at10/118+12987359..12993517RER1C protein, putative, expressed
LOC_Os08g21770NANA8+12994697..12998846retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21780NANA8+12999660..13001544retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17100.1.S1_at--939--9751Chr08:12976900..12976924 (25 bp)
TAATCCCAAGGAGCCACAGTTCAAA
LOC_Os08g21720
OsAffx.17100.1.S1_at--115--5871Chr08:12976894..12976914 (21 bp)
GAGCCACAGTTCAAAGGAGAGCCGT
LOC_Os08g21720
OsAffx.17100.1.S1_at--463--951Chr08:12976826..12976900 (25 bp)
AGGAGAGCCGTATAGCTTCCCTAAA
LOC_Os08g21720
OsAffx.17100.1.S1_at--302--6771Chr08:12976817..12976841 (25 bp)
GTATAGCTTCCCTAAATCGCCGGAC
LOC_Os08g21720
OsAffx.17100.1.S1_at--1020--2251Chr08:12976804..12976828 (25 bp)
AAATCGCCGGACTTTCACAAGGCAG
LOC_Os08g21720
OsAffx.17100.1.S1_at--581--10511Chr08:12976791..12976815 (25 bp)
TTCACAAGGCAGGACAGAGAGGATC
LOC_Os08g21720
OsAffx.17100.1.S1_at--363--2131Chr08:12976659..12976682 (24 bp)
ACAGGTACATGATCAGACAAGATAT
LOC_Os08g21720
OsAffx.17100.1.S1_at--255--3231Chr08:12976642..12976666 (25 bp)
CAAGATATGGCTGCTGGTTTGGCTT
LOC_Os08g21720
OsAffx.17100.1.S1_at--349--10111Chr08:12976637..12976661 (25 bp)
TATGGCTGCTGGTTTGGCTTATGTT
LOC_Os08g21720
OsAffx.17100.1.S1_at--174--10831Chr08:12976624..12976648 (25 bp)
TTGGCTTATGTTGGTTTGGCCTCTC
LOC_Os08g21720
OsAffx.17100.1.S1_at--1117--10211Chr08:12976610..12976634 (25 bp)
TTTGGCCTCTCTTGGACAACCCGGT
LOC_Os08g21720
Target Sequence 
TAATCCCAAGGAGCCACAGTTCAAAGGAGAGCCGTATAGCTTCCCTAAATCGCCGGACTTTCACAAGGCAGGACAGAGAG
GATCAGTCACAGGGAGGCTATTCGTCAGAGACAGGTACATGATCAGACAAGATATGGCTGCTGGTTTGGCTTATGTTGGT
TTGGCCTCTCTTGGACAACCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis