Browse Element(s) Details


OsAffx.5891.1.S1_s_at

Description tigr:9636.m02120
TID=OsAffx.5891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2170011/11DCL protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21700OsAffx.5891.1.S1_s_at11/118+12960165..12964786DCL protein, chloroplast precursor, putative, expressed
LOC_Os08g21710Os.40855.4.S1_x_at4/118+12969782..12971899hypothetical protein
LOC_Os08g21710Os.40360.1.S1_x_at1/118+12969782..12971899hypothetical protein
LOC_Os08g21720OsAffx.17100.1.S1_at11/118+12976544..12976962MYST1, putative
LOC_Os08g21740NANA8+12981981..12983647retrotransposon protein, putative, unclassified
LOC_Os08g21760Os.26760.1.A1_at11/118+12987359..12993517RER1C protein, putative, expressed
LOC_Os08g21760OsAffx.5892.1.S1_at10/118+12987359..12993517RER1C protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5891.1.S1_s_at--823--2271Chr08:12964514..12964538 (25 bp)
AAATCGTCCGCGACATCGATCCCGT
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--146--10711Chr08:12961449..12961473 (25 bp)
TTGCTTACCATCCACGTGTGGATGA
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--283--10831Chr08:12961419..12961443 (25 bp)
TTGGTTGTGGACTTGATGCTATAAT
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--1040--3431Chr08:12960391..12960415 (25 bp)
CAGTTCAGAAAGTCAAGATGCCTTT
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--270--7091Chr08:12960380..12960404 (25 bp)
GTCAAGATGCCTTTTTGTTGTTCGC
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--1153--7731Chr08:12960349..12960373 (25 bp)
GGTGTTTGGATTGATTTTTCATACC
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--357--10371Chr08:12960334..12960358 (25 bp)
TTTTCATACCAAAAGTGCCTCCGTG
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--963--7271Chr08:12960320..12960344 (25 bp)
GTGCCTCCGTGCATACATTCGAGAA
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--50--3531Chr08:12960283..12960307 (25 bp)
CATGCAGAGAGATTTATACGAGAAC
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--269--2751Chr08:12960230..12960254 (25 bp)
AAGAACGCTGGTATCCTTCAGCAAT
LOC_Os08g21700
OsAffx.5891.1.S1_s_at--668--4711Chr08:12960224..12960248 (25 bp)
GCTGGTATCCTTCAGCAATACAGGG
LOC_Os08g21700
Target Sequence 
AAATCGTCCGCGACATCGATCCCGTCGTGCAGCTCATCAAGGATATCCTCCACTCCGACAGGTATGGAGATGGTGAATGT
CTCAGCCCAAAGGATGAAAATATTATCGTCGAGAAGCTTCTTGCTTACCATCCACGTGTGGATGATAAGATTGGTTGTGG
ACTTGATGCTATAATGGTTGATAAGCACCCACAGTTCAGAAAGTCAAGATGCCTTTTTGTTGTTCGCACGGATGGTGTTT
GGATTGATTTTTCATACCAAAAGTGCCTCCGTGCATACATTCGAGAAAAGTATCCATCACATGCAGAGAGATTTATACGA
GAACATTTCAAGCGAACCTGAAGGTAATAGAAAAGAACGCTGGTATCCTTCAGCAATACAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5891.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis