Browse Element(s) Details


OsAffx.17152.1.S1_at

Description tigr:9636.m02519
TID=OsAffx.17152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2565011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25610NANA8+15454550..15456517transposon protein, putative, Mariner sub-class
LOC_Os08g25624OsAffx.29348.1.S1_s_at11/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624Os.18089.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624OsAffx.29348.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25640NANA8+15467702..15472224retrotransposon protein, putative, unclassified
LOC_Os08g25650OsAffx.17152.1.S1_at11/118+15473808..15475999hypothetical protein
LOC_Os08g25660OsAffx.31753.1.S1_s_at11/118+15478482..15481342hAT family dimerisation domain containing protein
LOC_Os08g25660OsAffx.31753.4.S1_s_at2/118+15478482..15481342hAT family dimerisation domain containing protein
LOC_Os08g25670Os.54366.1.S1_at5/118+15487160..15489689hypothetical protein
LOC_Os08g25680NANA8+15491443..15493156hypothetical protein
LOC_Os08g25690NANA8+15496856..15498109expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17152.1.S1_at--822--10851Chr08:15475204..15475228 (25 bp)
TTGGTTTTATCCCACCTACGATACA
LOC_Os08g25650
OsAffx.17152.1.S1_at--1095--1111Chr08:15475055..15475191 (25 bp)
AGTGCAAGACGACCATGGCTGCTTT
LOC_Os08g25650
OsAffx.17152.1.S1_at--216--7991Chr08:15475027..15475051 (25 bp)
GGATGCTGTTGCAACACTTCTCAAA
LOC_Os08g25650
OsAffx.17152.1.S1_at--927--7811Chr08:15474836..15474860 (25 bp)
GGATAACCGACACAGCTTTTCCAAT
LOC_Os08g25650
OsAffx.17152.1.S1_at--723--4891Chr08:15474822..15474846 (25 bp)
GCTTTTCCAATCTTAGGCATCTGCA
LOC_Os08g25650
OsAffx.17152.1.S1_at--1161--3631Chr08:15474743..15474767 (25 bp)
CTTAATTAGGGCAGCTCCATTCATT
LOC_Os08g25650
OsAffx.17152.1.S1_at--266--10871Chr08:15474031..15474055 (25 bp)
TTGGTTGCCCTCATCATGTATGGTT
LOC_Os08g25650
OsAffx.17152.1.S1_at--1063--9771Chr08:15474000..15474024 (25 bp)
TAAGGGTTATGTTGCACCCCATCTC
LOC_Os08g25650
OsAffx.17152.1.S1_at--1157--5471Chr08:15473949..15473973 (25 bp)
GAACATGCACATCACTGGGTATAAA
LOC_Os08g25650
OsAffx.17152.1.S1_at--21--10851Chr08:15473890..15473914 (25 bp)
TTGTGGAAAATGTCCCTGCGCTGGA
LOC_Os08g25650
OsAffx.17152.1.S1_at--869--4271Chr08:15473876..15473900 (25 bp)
CCTGCGCTGGAGTCTGTTACTATAG
LOC_Os08g25650
Target Sequence 
TTGGTTTTATCCCACCTACGATACATAAAAATTTTCCAGTGCAAGACGACCATGGCTGCTTTCCAGGATGCTGTTGCAAC
ACTTCTCAAAGGGATTCCAATCGTGCGGAATCTGACATTGCATGTTTGTTTCCAACAAATAGAGGCACGATGGCTGTTGG
ATAACCGACACAGCTTTTCCAATCTTAGGCATCTGCAGTTGTTAATGAACTTAAAAACTGAAGATGCCAACAAGATACAT
TACGCGGTTTCCTTAATTAGGGCAGCTCCATTCATTGAAAAGTTGGAGGTCCATTTTGGTTGCCCTCATCATGTATGGTT
TTCGGATAAGGGTTATGTTGCACCCCATCTCGAGCAACATGAATATAGTTATCTGAAGAACATGCACATCACTGGGTATA
AAGGGGAGAGAGGGCAGCTTGAATTTCTTAAAGATGTTGTGGAAAATGTCCCTGCGCTGGAGTCTGTTACTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis