Browse Element(s) Details


OsAffx.29348.1.S1_s_at

Description tigr:9636.m02517
TID=OsAffx.29348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phosphatephosphoenolpyruvate translocator precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2562411/11Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25590Os.10664.1.S1_at11/118+15438318..15441706Brain protein 44, putative, expressed
LOC_Os08g25600OsAffx.29347.1.S1_at11/118+15442831..15445641hypothetical protein
LOC_Os08g25610NANA8+15454550..15456517transposon protein, putative, Mariner sub-class
LOC_Os08g25624OsAffx.29348.1.S1_s_at11/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624Os.18089.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624OsAffx.29348.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25640NANA8+15467702..15472224retrotransposon protein, putative, unclassified
LOC_Os08g25650OsAffx.17152.1.S1_at11/118+15473808..15475999hypothetical protein
LOC_Os08g25660OsAffx.31753.1.S1_s_at11/118+15478482..15481342hAT family dimerisation domain containing protein
LOC_Os08g25660OsAffx.31753.4.S1_s_at2/118+15478482..15481342hAT family dimerisation domain containing protein
LOC_Os08g25670Os.54366.1.S1_at5/118+15487160..15489689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0009528cellular_componentplastid inner membrane
GO:0005355molecular_functionglucose transporter activity
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29348.1.S1_s_at--603--1051Chr08:15465716..15465740 (25 bp)
AGGTGTCCTACATGATCCTCGCGAG
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--874--711Chr08:15465727..15465751 (25 bp)
ATGATCCTCGCGAGGGTGTCTCCTG
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--1095--4611Chr08:15465736..15465760 (25 bp)
GCGAGGGTGTCTCCTGTCACTCACT
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--565--7091Chr08:15465751..15465775 (25 bp)
GTCACTCACTCCGTGGGCAACTGTG
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--332--3811Chr08:15465759..15465783 (25 bp)
CTCCGTGGGCAACTGTGTTAAGCGT
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--424--10491Chr08:15465776..15465800 (25 bp)
TTAAGCGTGTCGTGGTCATCGTAAC
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--403--7191Chr08:15465784..15465808 (25 bp)
GTCGTGGTCATCGTAACATCGGTTT
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--961--2091Chr08:15465799..15465823 (25 bp)
ACATCGGTTTTGTTCTTCAGGACTC
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--94--6811Chr08:15465805..15465829 (25 bp)
GTTTTGTTCTTCAGGACTCCTGTTT
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--628--951Chr08:15465817..15465841 (25 bp)
AGGACTCCTGTTTCTCCTATCAACT
LOC_Os08g25624
OsAffx.29348.1.S1_s_at--582--5091Chr08:15465939..15465963 (25 bp)
GCACTGCCATCGCACTTGCCGGAGT
LOC_Os08g25624
Target Sequence 
AGGTGTCCTACATGATCCTCGCGAGGGTGTCTCCTGTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATC
GTAACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGGCACTGCCATCGCACTTGCCGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29348.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis