Browse Element(s) Details


OsAffx.29347.1.S1_at

Description tigr:9636.m02514
TID=OsAffx.29347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2560011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25570Os.15998.1.S1_at11/118+15421296..15426307histone deacetylase, putative, expressed
LOC_Os08g25580OsAffx.22940.3.S1_at11/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.2.S1_s_at10/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.3.S1_x_at8/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.5.S1_x_at6/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.1.S1_s_at6/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580Os.35344.18.S1_x_at3/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580Os.35344.3.S1_x_at3/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.31552.2.S1_at1/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25590Os.10664.1.S1_at11/118+15438318..15441706Brain protein 44, putative, expressed
LOC_Os08g25600OsAffx.29347.1.S1_at11/118+15442831..15445641hypothetical protein
LOC_Os08g25610NANA8+15454550..15456517transposon protein, putative, Mariner sub-class
LOC_Os08g25624OsAffx.29348.1.S1_s_at11/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624Os.18089.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624OsAffx.29348.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25640NANA8+15467702..15472224retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29347.1.S1_at--975--3111Chr08:15444025..15444049 (25 bp)
AATTTCATCCAAACCATGGCGCGGA
LOC_Os08g25600
OsAffx.29347.1.S1_at--475--4151Chr08:15444062..15444082 (21 bp)
CGCCCTAGCAATAAGCGCGGTTATG
LOC_Os08g25600
OsAffx.29347.1.S1_at--193--2391Chr08:15444258..15444282 (25 bp)
AAACGTCGGTTGGTGGCATTTTGCA
LOC_Os08g25600
OsAffx.29347.1.S1_at--850--251Chr08:15444296..15444320 (25 bp)
ATATCCGGAGATTGCTTGTCAGCTT
LOC_Os08g25600
OsAffx.29347.1.S1_at--635--4591Chr08:15444325..15444349 (25 bp)
GCGAAGATCATCTGCCTATGCTGCT
LOC_Os08g25600
OsAffx.29347.1.S1_at--681--4451Chr08:15444338..15444362 (25 bp)
GCCTATGCTGCTCAGAATGTGGACA
LOC_Os08g25600
OsAffx.29347.1.S1_at--23--5291Chr08:15444352..15444376 (25 bp)
GAATGTGGACATTCACCTATACAGA
LOC_Os08g25600
OsAffx.29347.1.S1_at--235--31Chr08:15444622..15444643 (22 bp)
ATTGGCTTGGTCAGCACTTCCTAAA
LOC_Os08g25600
OsAffx.29347.1.S1_at--625--9691Chr08:15444692..15444716 (25 bp)
TCACTCTTGCTTATCTTGCTTCGTA
LOC_Os08g25600
OsAffx.29347.1.S1_at--608--10691Chr08:15444707..15444731 (25 bp)
TTGCTTCGTACAGGCTTGGTCACCA
LOC_Os08g25600
OsAffx.29347.1.S1_at--656--8572Chr08:15448483..15448503 (21 bp)
TGGTCACCACTTCCTAAAGGTTTTG
NONE
Target Sequence 
AATTTCATCCAAACCATGGCGCGGAAAAACGTTACCGCGCCCTAGCAATAAGCGCGGTTATGGAACAGGTATACCATCAA
ATAACTTCGAGAAACGTCGGTTGGTGGCATTTTGCAACGGCAAAATTCGATATCCGGAGATTGCTTGTCAGCTTGAAGGC
GAAGATCATCTGCCTATGCTGCTCAGAATGTGGACATTCACCTATACAGAGGAGAATGACCATTGGCTTGGTCAGCACTT
CCTAAAGGCACTCACTCTTGCTTATCTTGCTTCGTACAGGCTTGGTCACCACTTCCTAAAGGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis