Browse Element(s) Details


OsAffx.22940.3.S1_at

Description gb:NM_183521.1
DB_XREF= gi:34894169
GEN=P0439B06.6
TID=OsAffx.22940.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0439B06.6 (P0439B06.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2558011/11Transposable element protein, putative, MuDR
LOC_Os08g3667010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25550NANA8+15405672..15406445retrotransposon protein, putative, unclassified
LOC_Os08g25560NANA8+15407324..15409353retrotransposon protein, putative, unclassified
LOC_Os08g25570Os.15998.1.S1_at11/118+15421296..15426307histone deacetylase, putative, expressed
LOC_Os08g25580OsAffx.22940.3.S1_at11/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.2.S1_s_at10/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.3.S1_x_at8/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.5.S1_x_at6/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.1.S1_s_at6/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580Os.35344.18.S1_x_at3/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580Os.35344.3.S1_x_at3/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.31552.2.S1_at1/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25590Os.10664.1.S1_at11/118+15438318..15441706Brain protein 44, putative, expressed
LOC_Os08g25600OsAffx.29347.1.S1_at11/118+15442831..15445641hypothetical protein
LOC_Os08g25610NANA8+15454550..15456517transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22940.3.S1_at--887--6032Chr08:15433173..15433352 (25 bp)
GAGATCGCTGCCAGGGCAATCCAAC
LOC_Os08g25580
OsAffx.22940.3.S1_at--1100--1273Chr08:15433174..15433353 (25 bp)
AGATCGCTGCCAGGGCAATCCAACG
LOC_Os08g25580
OsAffx.22940.3.S1_at--60--6393Chr08:15433175..15433354 (25 bp)
GATCGCTGCCAGGGCAATCCAACGA
LOC_Os08g25580
OsAffx.22940.3.S1_at--642--533Chr08:15433176..15433355 (25 bp)
ATCGCTGCCAGGGCAATCCAACGAT
LOC_Os08g25580
OsAffx.22940.3.S1_at--528--4133Chr08:15433178..15433357 (25 bp)
CGCTGCCAGGGCAATCCAACGATGT
LOC_Os08g25580
OsAffx.22940.3.S1_at--4--4793Chr08:15433339..15433358 (20 bp)
GCTGCCAGGGCAATCCAACGATGTG
LOC_Os08g25580
OsAffx.22940.3.S1_at--877--3813Chr08:15433339..15433359 (21 bp)
CTGCCAGGGCAATCCAACGATGTGT
LOC_Os08g25580
OsAffx.22940.3.S1_at--1--9213Chr08:15433339..15433360 (22 bp)
TGCCAGGGCAATCCAACGATGTGTG
LOC_Os08g25580
OsAffx.22940.3.S1_at--180--4433Chr08:15433339..15433361 (23 bp)
GCCAGGGCAATCCAACGATGTGTGG
LOC_Os08g25580
OsAffx.22940.3.S1_at--306--4353Chr08:15433339..15433362 (24 bp)
CCAGGGCAATCCAACGATGTGTGGA
LOC_Os08g25580
OsAffx.22940.3.S1_at--387--3473Chr08:15433339..15433363 (25 bp)
CAGGGCAATCCAACGATGTGTGGAT
LOC_Os08g25580
Target Sequence 
GAGATCGCTGCCAGGGCAATCCAACGATGTGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22940.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis