Browse Element(s) Details


OsAffx.17209.1.S1_at

Description tigr:9636.m02813
TID=OsAffx.17209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2843011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28410OsAffx.29399.1.S1_at11/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28410Os.50043.1.A1_at1/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28420OsAffx.5964.1.S1_at11/118+17216612..17217773hypothetical protein
LOC_Os08g28430OsAffx.17209.1.S1_at11/118+17218761..17219235hypothetical protein
LOC_Os08g28430Os.25556.1.S1_x_at1/118+17218761..17219235hypothetical protein
LOC_Os08g28439OsAffx.22452.1.S1_x_at1/118+17222940..17223241NA
LOC_Os08g28450NANA8+17226929..17230663retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28460OsAffx.29400.1.S1_at10/118+17234716..17239388NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17209.1.S1_at--15--8251Chr08:17219178..17219202 (25 bp)
GGCACTCTCCAACCATGGTTGTGCA
LOC_Os08g28430
OsAffx.17209.1.S1_at--994--2911Chr08:17219152..17219176 (25 bp)
AAGGAGCAGCACTACTGGAACACCA
LOC_Os08g28430
OsAffx.17209.1.S1_at--1043--2751Chr08:17219128..17219152 (25 bp)
AAGACCATCAATCACAAGGCCTAAT
LOC_Os08g28430
OsAffx.17209.1.S1_at--378--3551Chr08:17219123..17219147 (25 bp)
CATCAATCACAAGGCCTAATGCGAC
LOC_Os08g28430
OsAffx.17209.1.S1_at--375--9771Chr08:17219107..17219131 (25 bp)
TAATGCGACTGATCATTTCACCAAA
LOC_Os08g28430
OsAffx.17209.1.S1_at--584--10311Chr08:17219092..17219116 (25 bp)
TTTCACCAAATGTATCACATCCAAT
LOC_Os08g28430
OsAffx.17209.1.S1_at--15--391Chr08:17219010..17219103 (25 bp)
ATCACATCCAATCCACATTTCAAGG
LOC_Os08g28430
OsAffx.17209.1.S1_at--468--5052Chr11:17121642..17121664 (22 bp)
GCAGCAGCTTACCACCAAACTTGGG
NONE
OsAffx.17209.1.S1_at--789--4971Chr08:17218950..17218974 (25 bp)
GCATCTGCGGCAGTAACCATGGCTT
LOC_Os08g28430
OsAffx.17209.1.S1_at--454--7051Chr08:17218938..17218962 (25 bp)
GTAACCATGGCTTCCAGTCTATTGC
LOC_Os08g28430
OsAffx.17209.1.S1_at--833--4911Chr08:17218929..17218953 (25 bp)
GCTTCCAGTCTATTGCTGGATGCGT
LOC_Os08g28430
Target Sequence 
GGCACTCTCCAACCATGGTTGTGCAGAAGGAGCAGCACTACTGGAACACCAAGACCATCAATCACAAGGCCTAATGCGAC
TGATCATTTCACCAAATGTATCACATCCAATCCACATTTCAAGGAGTTTCAGCAGCAGCTTACCACCAAACTTGGGGAGG
CATCTGCGGCAGTAACCATGGCTTCCAGTCTATTGCTGGATGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis