Browse Element(s) Details


OsAffx.29400.1.S1_at

Description tigr:9636.m02816
TID=OsAffx.29400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2846010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28410OsAffx.29399.1.S1_at11/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28410Os.50043.1.A1_at1/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28420OsAffx.5964.1.S1_at11/118+17216612..17217773hypothetical protein
LOC_Os08g28430OsAffx.17209.1.S1_at11/118+17218761..17219235hypothetical protein
LOC_Os08g28430Os.25556.1.S1_x_at1/118+17218761..17219235hypothetical protein
LOC_Os08g28439OsAffx.22452.1.S1_x_at1/118+17222940..17223241NA
LOC_Os08g28450NANA8+17226929..17230663retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28460OsAffx.29400.1.S1_at10/118+17234716..17239388NB-ARC domain containing protein, expressed
LOC_Os08g28470OsAffx.17210.1.S1_at11/118+17246944..17250959disease resistance protein RPM1 homolog, putative
LOC_Os08g28470OsAffx.7163.1.S1_at1/118+17246944..17250959disease resistance protein RPM1 homolog, putative
LOC_Os08g28480OsAffx.17211.1.S1_at10/118+17251653..17254587hypothetical protein
LOC_Os08g28490Os.40360.1.S1_x_at3/118+17256920..17259523hypothetical protein
LOC_Os08g28490Os.40855.5.S1_x_at1/118+17256920..17259523hypothetical protein
LOC_Os08g28500Os.46012.2.S1_x_at6/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28500Os.46012.3.S1_x_at4/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28500Os.27088.1.A1_x_at3/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29400.1.S1_at--802--1211Chr08:17236431..17236455 (25 bp)
AGTTCAAAGGCGTAGCTCTTGCTAA
LOC_Os08g28460
OsAffx.29400.1.S1_at--247--9891Chr08:17236337..17236361 (25 bp)
TACATTATTTGTTTCACTGCCCTTC
LOC_Os08g28460
OsAffx.29400.1.S1_at--746--10571Chr08:17236309..17236333 (25 bp)
TTCTATGGCGGTCCCTTTACATTTT
LOC_Os08g28460
OsAffx.29400.1.S1_at--999--8211Chr08:17236237..17236261 (25 bp)
GGAATTCGATGCAGAAGCTCAACAG
LOC_Os08g28460
OsAffx.29400.1.S1_at--1018--5291Chr08:17236213..17236237 (25 bp)
GAAGGCTCAATCATGCATGTTTTAA
LOC_Os08g28460
OsAffx.29400.1.S1_at--985--3491NONE
CATGTTTTAAACAGCTTTCCCTAAG
NONE
OsAffx.29400.1.S1_at--12--5031Chr08:17234922..17234946 (25 bp)
GCAGTAACAGAATTCAATGGCGCCT
LOC_Os08g28460
OsAffx.29400.1.S1_at--1109--2951Chr08:17234907..17234931 (25 bp)
AATGGCGCCTGTTGAGCCAAGCAAC
LOC_Os08g28460
OsAffx.29400.1.S1_at--358--5212Chr08:17234881..17234905 (25 bp)
GAATTGCAGCAAATGGATCTCCACC
LOC_Os08g28460
OsAffx.29400.1.S1_at--36--7971Chr08:17234867..17234891 (25 bp)
GGATCTCCACCCTGGAGCTTTAAAA
LOC_Os08g28460
OsAffx.29400.1.S1_at--413--2351Chr08:17234845..17234869 (25 bp)
AAAGCAGCCAATTTGACCTTTTCTT
LOC_Os08g28460
Target Sequence 
AGTTCAAAGGCGTAGCTCTTGCTAAGGATAATCATGTTACAGCAAAATGGAAAGTTGGTAGGTAATGTGATTTTTTGCAA
TATGGATGAGGCAATACATTATTTGTTTCACTGCCCTTCTTTTTCTATGGCGGTCCCTTTACATTTTTTCTAATTTTTCT
ACCTTCAATAGTCAATACTGTCAGTAACATATTTGGAATTCGATGCAGAAGCTCAACAGAAGGCTCAATCATGCATGTTT
TAAACAGCTTTCCCTAAGAAGGCAGTAACAGAATTCAATGGCGCCTGTTGAGCCAAGCAACAGAATTGCAGCAAATGGAT
CTCCACCCTGGAGCTTTAAAAGCAGCCAATTTGACCTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis