Browse Element(s) Details


OsAffx.17211.1.S1_at

Description tigr:9636.m02818
TID=OsAffx.17211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2848010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28450NANA8+17226929..17230663retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28460OsAffx.29400.1.S1_at10/118+17234716..17239388NB-ARC domain containing protein, expressed
LOC_Os08g28470OsAffx.17210.1.S1_at11/118+17246944..17250959disease resistance protein RPM1 homolog, putative
LOC_Os08g28470OsAffx.7163.1.S1_at1/118+17246944..17250959disease resistance protein RPM1 homolog, putative
LOC_Os08g28480OsAffx.17211.1.S1_at10/118+17251653..17254587hypothetical protein
LOC_Os08g28490Os.40360.1.S1_x_at3/118+17256920..17259523hypothetical protein
LOC_Os08g28490Os.40855.5.S1_x_at1/118+17256920..17259523hypothetical protein
LOC_Os08g28500Os.46012.2.S1_x_at6/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28500Os.46012.3.S1_x_at4/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28500Os.27088.1.A1_x_at3/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28510OsAffx.5965.1.S1_at11/118+17272381..17277484hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17211.1.S1_at--932--5551Chr08:17251698..17251722 (25 bp)
GAAAGAAGACCTCTCAACCCTTCTG
LOC_Os08g28480
OsAffx.17211.1.S1_at--708--10591Chr08:17251718..17251742 (25 bp)
TTCTGCCAAGGGTTTCATTATTTCC
LOC_Os08g28480
OsAffx.17211.1.S1_at--515--3591Chr08:17251733..17251757 (25 bp)
CATTATTTCCTTGGGCAAGCACTCT
LOC_Os08g28480
OsAffx.17211.1.S1_at--167--4431Chr08:17251758..17251782 (25 bp)
GCCATTTCCCAAGGCACGAAGGATA
LOC_Os08g28480
OsAffx.17211.1.S1_at--102--1231Chr08:17251813..17251837 (25 bp)
AGTTCATTACTCATTGTAGCGGGAA
LOC_Os08g28480
OsAffx.17211.1.S1_at--947--3971Chr08:17251865..17251889 (25 bp)
CGGGAATGTCATTTCTGGTTACGAA
LOC_Os08g28480
OsAffx.17211.1.S1_at--157--6871Chr08:17251893..17251917 (25 bp)
GTTTGTGGGACAACCTTTGGAGTCA
LOC_Os08g28480
OsAffx.17211.1.S1_at--247--2791Chr08:17252120..17252144 (25 bp)
AAGAGTATCATATTGCTGACCGTAA
LOC_Os08g28480
OsAffx.17211.1.S1_at--1060--9751NONE
TAATGAAAGGTTCTCTCATCCACAT
NONE
OsAffx.17211.1.S1_at--51--591Chr08:17254426..17254450 (25 bp)
ATCCACATGGCTGGCCCTAAGCGAG
LOC_Os08g28480
OsAffx.17211.1.S1_at--45--6371Chr08:17254452..17254476 (25 bp)
GATCCAATTGATCGGCACTAATCTA
LOC_Os08g28480
Target Sequence 
GAAAGAAGACCTCTCAACCCTTCTGCCAAGGGTTTCATTATTTCCTTGGGCAAGCACTCTGCCATTTCCCAAGGCACGAA
GGATATAGAGAAAAGCAATACTGACACAATGAACAAGTTCATTACTCATTGTAGCGGGAATGGTGCAGAAGATGGGAGGA
CATCAAGCGGGAATGTCATTTCTGGTTACGAAGGTGTTTGTGGGACAACCTTTGGAGTCATAGACAACAAAGCTGATACA
ACAGGAGAAATTGTGGATGTTACTGGTTGTGAACTGAGCAGTGGAGACAAAAGAGAGCTTGGCTGCAGGGGGGCACAGAT
TGCTGGAAAAAAGAGTATCATATTGCTGACCGTAATGAAAGGTTCTCTCATCCACATGGCTGGCCCTAAGCGAGGGATCC
AATTGATCGGCACTAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis