Browse Element(s) Details


OsAffx.17233.1.S1_at

Description tigr:9636.m02979
TID=OsAffx.17233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2995011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29910NANA8+18244101..18246661prenyltransferase, UbiA family protein
LOC_Os08g29920NANA8+18249209..18252123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29930Os.10703.2.S1_x_at1/118+18252439..18258549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29940OsAffx.5983.1.S1_at11/118+18261707..18262076hypothetical protein
LOC_Os08g29950OsAffx.17233.1.S1_at11/118+18265521..18267996hypothetical protein
LOC_Os08g29960OsAffx.17234.1.S1_at10/118+18269271..18270366hypothetical protein
LOC_Os08g29970NANA8+18272835..18274766Para-hydroxybenzoate-polyprenyltransferase, mitochondrial precursor, putative
LOC_Os08g29980Os.49832.1.S1_at11/118+18281927..18286755retrotransposon protein, putative, unclassified, expressed
LOC_Os08g29990NANA8+18288733..18294595retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17233.1.S1_at--476--8531Chr08:18265864..18266286 (25 bp)
TGGACAGGTCAATCACGATGGCAGC
LOC_Os08g29950
OsAffx.17233.1.S1_at--139--7831Chr08:18266268..18266292 (25 bp)
GGTCAATCACGATGGCAGCGATGCC
LOC_Os08g29950
OsAffx.17233.1.S1_at--848--991Chr08:18266312..18266336 (25 bp)
AGGATGCTGGCGCTCTTCGCCTATG
LOC_Os08g29950
OsAffx.17233.1.S1_at--783--8391Chr08:18266320..18266344 (25 bp)
GGCGCTCTTCGCCTATGGATCCGTC
LOC_Os08g29950
OsAffx.17233.1.S1_at--414--7971Chr08:18266336..18266360 (25 bp)
GGATCCGTCCTCATCAGAGGCGTCG
LOC_Os08g29950
OsAffx.17233.1.S1_at--386--3431Chr08:18266350..18266374 (25 bp)
CAGAGGCGTCGGATGCACAATCAAC
LOC_Os08g29950
OsAffx.17233.1.S1_at--92--7992Chr08:18266360..18266384 (25 bp)
GGATGCACAATCAACGATCTTCTTG
LOC_Os08g29950
OsAffx.17233.1.S1_at--657--2331Chr08:18267926..18267948 (23 bp)
AAAGATCTCTGTCAATGTTCGTCCA
LOC_Os08g29950
OsAffx.17233.1.S1_at--890--6411Chr08:18267927..18267951 (25 bp)
GATCTCTGTCAATGTTCGTCCATAT
LOC_Os08g29950
OsAffx.17233.1.S1_at--543--3191Chr08:18267936..18267960 (25 bp)
CAATGTTCGTCCATATATGATGCGG
LOC_Os08g29950
OsAffx.17233.1.S1_at--917--9391Chr08:18267942..18267966 (25 bp)
TCGTCCATATATGATGCGGAACTTT
LOC_Os08g29950
Target Sequence 
TGGACAGGTCAATCACGATGGCAGCGATGCCAGGGGAGCTGCCGGACATGAGGATGCTGGCGCTCTTCGCCTATGGATCC
GTCCTCATCAGAGGCGTCGGATGCACAATCAACGATCTTCTTGATCGAGATATTGATAGAAAGATCTCTGTCAATGTTCG
TCCATATATGATGCGGAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis