Browse Element(s) Details


OsAffx.17242.1.S1_at

Description tigr:9636.m03045
TID=OsAffx.17242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g474803/11hypothetical protein
LOC_Os05g199803/11hypothetical protein
LOC_Os11g187401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47480OsAffx.17242.1.S1_at3/113+26806770..26807924hypothetical protein
LOC_Os03g47480OsAffx.28616.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.27980.1.S1_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.3.S1_x_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47490OsAffx.25607.1.S1_at11/113+26808726..26811149hypothetical protein
LOC_Os03g47500Os.10547.1.S1_at11/113+26812209..26814172Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g47510OsAffx.25608.1.S1_at10/113+26817715..26821692hypothetical protein
LOC_Os03g47530NANA3+26827317..26828548Glycosyl transferase family 8 protein, expressed
LOC_Os03g47540OsAffx.25610.1.S1_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47540OsAffx.25610.1.S1_s_at11/113+26831220..26834431hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17242.1.S1_at--875--1091Chr08:18660998..18661022 (25 bp)
AGTGGCTGCTCCATGTCGGCGACTT
NONE
OsAffx.17242.1.S1_at--972--4752Chr08:18661002..18661026 (25 bp)
GCTGCTCCATGTCGGCGACTTTGAT
NONE
OsAffx.17242.1.S1_at--1103--4331Chr08:18661008..18661032 (25 bp)
CCATGTCGGCGACTTTGATAGAACA
NONE
OsAffx.17242.1.S1_at--420--5511NONE
GAACAAGCAAATTAACAATACTCTT
NONE
OsAffx.17242.1.S1_at--496--20113Chr08:18661627..18661651 (25 bp)
ACTCTTAGTATCAGTCTACACGGTG
NONE
OsAffx.17242.1.S1_at--722--100511Chr08:18661632..18661656 (25 bp)
TAGTATCAGTCTACACGGTGGCTAC
NONE
OsAffx.17242.1.S1_at--123--96520Chr11:10596574..10596608 (25 bp)
TCAGTCTACACGGTGGCTACGAGAT
LOC_Os11g18740
OsAffx.17242.1.S1_at--696--8311Chr08:18661651..18661675 (25 bp)
GGCTACGAGATCATGGTTGTATCGA
NONE
OsAffx.17242.1.S1_at--371--411Chr08:18661660..18661684 (25 bp)
ATCATGGTTGTATCGAGAGGAAGGT
NONE
OsAffx.17242.1.S1_at--111--8191Chr08:18661678..18661926 (25 bp)
GGAAGGTGGTATTGCGTTATACGAT
NONE
OsAffx.17242.1.S1_at--1137--4631Chr08:18661915..18661939 (25 bp)
GCGTTATACGATGTGGAGGCATTAA
NONE
Target Sequence 
AGTGGCTGCTCCATGTCGGCGACTTTGATAGAACAAGCAAATTAACAATACTCTTAGTATCAGTCTACACGGTGGCTACG
AGATCATGGTTGTATCGAGAGGAAGGTGGTATTGCGTTATACGATGTGGAGGCATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis