Browse Element(s) Details


OsAffx.17296.1.S1_x_at

Description tigr:9636.m03250
TID=OsAffx.17296.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3253011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32490NANA8+19995263..19995622hypothetical protein
LOC_Os08g32500Os.53608.1.A1_at11/118+19996905..20000825permease, putative, expressed
LOC_Os08g32510NANA8+20003667..20004136hypothetical protein
LOC_Os08g32520Os.43236.1.S1_at9/118+20011464..20012574expressed protein
LOC_Os08g32530OsAffx.17296.1.S1_x_at11/118+20018462..20019765hypothetical protein
LOC_Os08g32540OsAffx.29475.2.S1_s_at11/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32540OsAffx.29475.2.S1_at5/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32550NANA8+20029908..20030588Zinc knuckle family protein
LOC_Os08g32560OsAffx.17297.1.S1_at11/118+20032192..20032860hypothetical protein
LOC_Os08g32570Os.54408.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.2.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.54408.1.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32580Os.2741.4.S1_x_at8/118+20043808..20049748retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17296.1.S1_x_at--142--7731Chr08:20019235..20019259 (25 bp)
GGTGGCGGATATGGCGACGACGTCG
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--932--8411Chr08:20019263..20019287 (25 bp)
GGCCGCGGCGCGTGTTGCGACACCG
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--480--10671Chr08:20019277..20019301 (25 bp)
TTGCGACACCGGCCGGGCTCGTCAA
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--508--4711Chr08:20019419..20019443 (25 bp)
GCTGGCGGCGACGTCTGGCGATGGT
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--112--4571Chr08:20019502..20019526 (25 bp)
GCGCCTGTTGCGGTGATGGTTGGCA
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--313--10851Chr08:20019521..20019545 (25 bp)
TTGGCAGGCCATCACAACCGAAGGG
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--298--1391Chr08:20019593..20019617 (25 bp)
AGACCGGGTGTAGGCGCAACGTCGA
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--1111--7211Chr08:20019613..20019637 (25 bp)
GTCGACGGCGGGAAGATATGTGGCA
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--761--3831Chr08:20019656..20019680 (25 bp)
CTGAAGGGACAATGTGTCGACCGAC
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--686--2971Chr08:20019666..20019690 (25 bp)
AATGTGTCGACCGACGACAGTCCTT
LOC_Os08g32530
OsAffx.17296.1.S1_x_at--677--1851Chr08:20019679..20019703 (25 bp)
ACGACAGTCCTTCTTGTGCGGATTG
LOC_Os08g32530
Target Sequence 
GGTGGCGGATATGGCGACGACGTCGGCGGGCCGCGGCGCGTGTTGCGACACCGGCCGGGCTCGTCAAGGACCTCGCCGCA
TGACCTCTGGCGCGACACCCTCGTCGACGCTCCCTCCACGACGCCGACGACCCGCGCGGCGCGCTGCACCTCCAGATCCG
CGCCACCCAGGCCGGATCTGGCCGGCTGGCGGCGACGTCTGGCGATGGTGGCAGCTGACGGTGGCGGATGGCGACGGTGG
CGGTGGCGGTGGCGGCTGGCGACGGTGGCGCCTGTTGCGGTGATGGTTGGCAGGCCATCACAACCGAAGGGGCTGACGGT
GTGTCGGCGGCGGCGGCAACATGTGGAGGTGGGGAAGGAGACCGGGTGTAGGCGCAACGTCGACGGCGGGAAGATATGTG
GCAGTGGCCTAGGCCGGATCGCTGAAGGGACAATGTGTCGACCGACGACAGTCCTTCTTGTGCGGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17296.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis