Browse Element(s) Details


OsAffx.17323.1.S1_at

Description tigr:9636.m03414
TID=OsAffx.17323.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3404010/11expressed protein
LOC_Os06g345701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34000NANA8+21168747..21169358glycosyl transferase family 1 protein, putative
LOC_Os08g34010OsAffx.29500.1.S1_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34010Os.6873.1.S1_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34010OsAffx.29500.1.S1_x_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34020Os.15004.1.S1_at11/118+21181776..21184818exostosin family protein, putative, expressed
LOC_Os08g34030OsAffx.17322.1.S1_at11/118+21184788..21185574hypothetical protein
LOC_Os08g34040OsAffx.17323.1.S1_at10/118+21189225..21190083expressed protein
LOC_Os08g34050OsAffx.29501.1.S1_at11/118+21192127..21196463phosphofructokinase family protein, putative, expressed
LOC_Os08g34060Os.5676.1.S2_at11/118+21204797..21221734expressed protein
LOC_Os08g34060Os.5676.1.S1_at11/118+21204797..21221734expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17323.1.S1_at--435--8451Chr08:21189968..21189990 (23 bp)
GGCCACGGGCGCTTCATGGACAGAA
LOC_Os08g34040
OsAffx.17323.1.S1_at--484--1911NONE
ACGGGCGCTTCATGGACAGAAACAA
NONE
OsAffx.17323.1.S1_at--798--6631Chr08:21189414..21189438 (25 bp)
GTTGTTACAGTATGAATTGACTTGC
LOC_Os08g34040
OsAffx.17323.1.S1_at--147--5212Chr06:20107197..20107219 (23 bp)
GAATTGACTTGCTTAACTAGATTGA
LOC_Os06g34570
OsAffx.17323.1.S1_at--973--2011Chr08:21189386..21189410 (25 bp)
ACTAGATTGAATTTTGACGACGAAC
LOC_Os08g34040
OsAffx.17323.1.S1_at--84--5791Chr08:21189371..21189395 (25 bp)
GACGACGAACGGATCAACAGTGAAG
LOC_Os08g34040
OsAffx.17323.1.S1_at--802--7951Chr08:21189361..21189385 (25 bp)
GGATCAACAGTGAAGAGGCGTCTAC
LOC_Os08g34040
OsAffx.17323.1.S1_at--678--891Chr08:21189346..21189370 (25 bp)
AGGCGTCTACATTCATGGTTCGTTC
LOC_Os08g34040
OsAffx.17323.1.S1_at--440--832Chr10:22300962..22300991 (25 bp)
ATGGTTCGTTCCCATGAAGATGTAC
NONE
OsAffx.17323.1.S1_at--725--9872Chr10:22300989..22301009 (21 bp)
TACAGGTGCAAAATCTGCCGTCCGT
NONE
OsAffx.17323.1.S1_at--63--2451Chr08:21189301..21189325 (25 bp)
AAAATCTGCCGTCCGTTCGTCTTCA
LOC_Os08g34040
Target Sequence 
GGCCACGGGCGCTTCATGGACAGAAACAAGAAATTCAGTTTCTTGTCAGAAATTATGTTGTTACAGTATGAATTGACTTG
CTTAACTAGATTGAATTTTGACGACGAACGGATCAACAGTGAAGAGGCGTCTACATTCATGGTTCGTTCCCATGAAGATG
TACAGGTGCAAAATCTGCCGTCCGTTCGTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis