Browse Element(s) Details


OsAffx.17332.1.S1_at

Description tigr:9636.m03478
TID=OsAffx.17332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3466011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34610OsAffx.29509.1.S1_at8/118+21615253..21617175hypothetical protein
LOC_Os08g34620OsAffx.6022.1.S1_at11/118+21622638..21623560hypothetical protein
LOC_Os08g34640Os.50267.1.S1_at11/118+21623684..21629276Leucine Rich Repeat family protein, expressed
LOC_Os08g34630OsAffx.29510.1.S1_at11/118+21629199..21630666hypothetical protein
LOC_Os08g34650Os.54177.1.S1_s_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650OsAffx.29511.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650Os.18569.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34660OsAffx.17332.1.S1_at11/118+21639890..21640731hypothetical protein
LOC_Os08g34670NANA8+21645020..21647880retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34680OsAffx.28184.1.S1_x_at3/118+21651323..21651607hypothetical protein
LOC_Os08g34690OsAffx.12155.1.S1_at11/118+21664632..21668176hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17332.1.S1_at--550--7491Chr08:21640522..21640545 (24 bp)
GTGGTGGCCTGCAGCTTCTCCTGGA
LOC_Os08g34660
OsAffx.17332.1.S1_at--251--1551Chr08:21640447..21640533 (25 bp)
AGCTTCTCCTGGACTACGGGCGACG
LOC_Os08g34660
OsAffx.17332.1.S1_at--1152--8071Chr08:21640437..21640461 (25 bp)
GGACTACGGGCGACGTCACTCCTGG
LOC_Os08g34660
OsAffx.17332.1.S1_at--1146--5251Chr08:21640358..21640382 (25 bp)
GAATCGCATTGGGAGCGAACACCAT
LOC_Os08g34660
OsAffx.17332.1.S1_at--1104--4571Chr08:21640344..21640368 (25 bp)
GCGAACACCATTGGTACGAACCGTT
LOC_Os08g34660
OsAffx.17332.1.S1_at--1008--1792Chr11:17613021..17613041 (21 bp)
ACCCCTGGTGGTGGTAGATGTTCAC
NONE
OsAffx.17332.1.S1_at--873--6271Chr08:21640287..21640311 (25 bp)
GATGTTCACCGTTAGCTGGTTATCC
LOC_Os08g34660
OsAffx.17332.1.S1_at--27--7891Chr08:21640270..21640294 (25 bp)
GGTTATCCTCGCCATCGCAAGATTA
LOC_Os08g34660
OsAffx.17332.1.S1_at--652--5171Chr08:21640254..21640278 (25 bp)
GCAAGATTACGCGAACAACCACCAG
LOC_Os08g34660
OsAffx.17332.1.S1_at--406--10471Chr08:21640248..21640272 (25 bp)
TTACGCGAACAACCACCAGTTGCAT
LOC_Os08g34660
OsAffx.17332.1.S1_at--40--10811Chr08:21639983..21640007 (25 bp)
TTGTCTTCGCCACATGCTCCAAGTC
LOC_Os08g34660
Target Sequence 
GTGGTGGCCTGCAGCTTCTCCTGGACTACGGGCGACGTCACTCCTGGGCTGCTCGACCACCGCGGTGGTGGGCGCGGAGA
GAGGCGGGCGCCGCAACGGCGGAATCGCATTGGGAGCGAACACCATTGGTACGAACCGTTCCACCAGCCGCAGCACACCC
CTGGTGGTGGTAGATGTTCACCGTTAGCTGGTTATCCTCGCCATCGCAAGATTACGCGAACAACCACCAGTTGCATCTAC
CTCGCTGGCCCTCCTCCCCGCTGCGTCGGTGACGCTGCCACCGCCCAACTCCTCTTCACCGGTCGCTGGCCGTCACGCTG
GCCCTCCTCCCGCCGCGTCGATGACGTCGCAGCCGCCCACGCCCAGCTCGCCCGCTCGTCGGTGGAAAGGTTGCAGCGGG
CGAGTGGGCGGTGGAAAGGCGGCAGCAGCTGCCGCACACCATCTCCGCAACACTGGCCACCTAGCGTCACCGCCACTTGT
CTTCGCCACATGCTCCAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis