Browse Element(s) Details


Os.50267.1.S1_at

Description gb:AK120424.1
DB_XREF= gi:37990047
TID=Os.50267.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095E07, full insert sequence.
FL= gb:AK120424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3464011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34590Os.45976.1.S1_at5/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34590Os.45976.1.S1_x_at3/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34600Os.46306.1.S1_x_at6/118+21607586..21610911transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34610OsAffx.29509.1.S1_at8/118+21615253..21617175hypothetical protein
LOC_Os08g34620OsAffx.6022.1.S1_at11/118+21622638..21623560hypothetical protein
LOC_Os08g34640Os.50267.1.S1_at11/118+21623684..21629276Leucine Rich Repeat family protein, expressed
LOC_Os08g34630OsAffx.29510.1.S1_at11/118+21629199..21630666hypothetical protein
LOC_Os08g34650Os.54177.1.S1_s_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650OsAffx.29511.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650Os.18569.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34660OsAffx.17332.1.S1_at11/118+21639890..21640731hypothetical protein
LOC_Os08g34670NANA8+21645020..21647880retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34680OsAffx.28184.1.S1_x_at3/118+21651323..21651607hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50267.1.S1_at--874--5671Chr08:21624237..21624261 (25 bp)
GACATTGTCGGTTGGGTGACCGCAA
LOC_Os08g34640
Os.50267.1.S1_at--916--5851Chr08:21624198..21624222 (25 bp)
GACCAAATCGAACTCGTCTGCGACT
LOC_Os08g34640
Os.50267.1.S1_at--499--9411Chr08:21624185..21624209 (25 bp)
TCGTCTGCGACTCGACGCTGATGGA
LOC_Os08g34640
Os.50267.1.S1_at--1083--1471Chr08:21624126..21624150 (25 bp)
AGCAAGGTCCTGTCCTTGGCTCTTA
LOC_Os08g34640
Os.50267.1.S1_at--660--3611Chr08:21624112..21624136 (25 bp)
CTTGGCTCTTAGGTGCGCAGCGAAG
LOC_Os08g34640
Os.50267.1.S1_at--208--951Chr08:21624089..21624113 (25 bp)
AGGAAGCGAGCCGAAGGCCGCCCAT
LOC_Os08g34640
Os.50267.1.S1_at--918--4151Chr08:21624071..21624095 (25 bp)
CGCCCATGGCCGATGTTGTGAAGGA
LOC_Os08g34640
Os.50267.1.S1_at--634--4251Chr08:21623989..21624013 (25 bp)
CCGGAGCTCGTCCTGACAATAGAAT
LOC_Os08g34640
Os.50267.1.S1_at--96--3511Chr08:21623963..21623987 (25 bp)
CATGGTATAACCTAGCCGTTCAGCC
LOC_Os08g34640
Os.50267.1.S1_at--187--6751Chr08:21623946..21623970 (25 bp)
GTTCAGCCCCTCAGGACTCAGATAG
LOC_Os08g34640
Os.50267.1.S1_at--942--951Chr08:21623934..21623958 (25 bp)
AGGACTCAGATAGCCTGGTACTCTG
LOC_Os08g34640
Target Sequence 
GACATTGTCGGTTGGGTGACCGCAACGCTCAACGGCACNGACCAAATCGAACTCGTCTGCGACTCGACGCTGATGGAGGA
AGTCTATGGCACGGTGGAAATAGAGGAAGTCAGCAAGGTCCTGTCCTTGGCTCTTAGGTGCGCAGCGAAGGAAGCGAGCC
GAAGGCCGCCCATGGCCGATGTTGTGAAGGAGCTGACTGANGTCANGAAATCCGCCGGGAAGTTGTCCAAGCCGGAGAAG
ACGGCCTCCCGGAGCTCGTCCTGACAATAGAATTCATGGTATAACCTAGCCGTTCAGCCCCTCAGGACTCAGATAGCCTG
GTACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis