Browse Element(s) Details


OsAffx.29510.1.S1_at

Description tigr:9636.m03476
TID=OsAffx.29510.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3463011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34590Os.45976.1.S1_at5/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34590Os.45976.1.S1_x_at3/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34600Os.46306.1.S1_x_at6/118+21607586..21610911transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34610OsAffx.29509.1.S1_at8/118+21615253..21617175hypothetical protein
LOC_Os08g34620OsAffx.6022.1.S1_at11/118+21622638..21623560hypothetical protein
LOC_Os08g34640Os.50267.1.S1_at11/118+21623684..21629276Leucine Rich Repeat family protein, expressed
LOC_Os08g34630OsAffx.29510.1.S1_at11/118+21629199..21630666hypothetical protein
LOC_Os08g34650Os.54177.1.S1_s_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650OsAffx.29511.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650Os.18569.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34660OsAffx.17332.1.S1_at11/118+21639890..21640731hypothetical protein
LOC_Os08g34670NANA8+21645020..21647880retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34680OsAffx.28184.1.S1_x_at3/118+21651323..21651607hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29510.1.S1_at--228--9331Chr08:21630072..21630096 (25 bp)
TCGCCAACTTGCTCGGGCAGCCAGG
LOC_Os08g34630
OsAffx.29510.1.S1_at--291--4711Chr08:21630113..21630137 (25 bp)
GCGGCGATGACAACCACCAGATCTG
LOC_Os08g34630
OsAffx.29510.1.S1_at--957--671Chr08:21630119..21630143 (25 bp)
ATGACAACCACCAGATCTGTGTCGC
LOC_Os08g34630
OsAffx.29510.1.S1_at--823--5291Chr08:21630181..21630205 (25 bp)
GAAGGCATCGGCAACGAAGGCAACG
LOC_Os08g34630
OsAffx.29510.1.S1_at--382--1951Chr08:21630227..21630251 (25 bp)
ACGGCGACGGCAGTCTCGGCAATAG
LOC_Os08g34630
OsAffx.29510.1.S1_at--346--1071Chr08:21630287..21630311 (25 bp)
AGGGCACCCGGATCTGGCACCTCTG
LOC_Os08g34630
OsAffx.29510.1.S1_at--144--3971Chr08:21630295..21630319 (25 bp)
CGGATCTGGCACCTCTGCGCTGGAT
LOC_Os08g34630
OsAffx.29510.1.S1_at--901--8411Chr08:21630426..21630450 (25 bp)
GGCCTGGGAGACTTGTGGCGACGAC
LOC_Os08g34630
OsAffx.29510.1.S1_at--756--4231Chr08:21630572..21630596 (25 bp)
CCGAGGTGCCGGTGCGTCACGACAA
LOC_Os08g34630
OsAffx.29510.1.S1_at--551--7291Chr08:21630583..21630607 (25 bp)
GTGCGTCACGACAAGGCTTGCCGGT
LOC_Os08g34630
OsAffx.29510.1.S1_at--916--9671Chr08:21630588..21630612 (25 bp)
TCACGACAAGGCTTGCCGGTGTGGA
LOC_Os08g34630
Target Sequence 
TCGCCAACTTGCTCGGGCAGCCAGGGGAGTCACCCTGGGTGGCGGCGATGACAACCACCAGATCTGTGTCGCCTCGGCCG
GATCTAGCGGGGTGGCGGCCGGCAGCGGGGAAGGCATCGGCAACGAAGGCAACGGGGATGGCGGCAGGGATGGTGACGGC
GACGGCAGTCTCGGCAATAGGAGGCGGCGGTGGCGGAGACCGCGGATCCGGTGGCAGGGCACCCGGATCTGGCACCTCTG
CGCTGGATCTGCCCGGTGGCGGCGTGGGCGGGCCGGCGCGGCCTGGTGCGGCTGGCAGGAGGATGGCGCAACCATGGGTG
ATGGTGGCGACGGGCCAGCGCGATGCGGCGGCGTGGCCTGGGAGACTTGTGGCGACGACGGCGACAGCGGGCAGCCGACG
AGAGGAACAACGGCGGAGGCAGTATGCGTGGAGGCGCAGCTAGTGACGCCGGAGGCTGATAAGGCGCGGCCGGTGACAGC
CGCGGTGCGTGGAGGCGAGGCCGAGGTGCCGGTGCGTCACGACAAGGCTTGCCGGTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis