Browse Element(s) Details


OsAffx.17377.1.S1_at

Description tigr:9636.m03751
TID=OsAffx.17377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3736011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37320Os.10781.1.S1_at10/118+23446411..23449336ATP synthase D chain, mitochondrial, putative, expressed
LOC_Os08g37329NANA8+23451107..23451539NA
LOC_Os08g37340OsAffx.6056.1.S1_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37340OsAffx.6056.1.S1_x_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37350Os.11306.1.S1_at11/118+23460857..23468289Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g37360OsAffx.17377.1.S1_at11/118+23471844..23472276hypothetical protein
LOC_Os08g37370OsAffx.6057.1.S1_s_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37370Os.7930.1.S1_x_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37380Os.23365.1.S1_at11/118+23490237..23495714Glucose-6-phosphate isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17377.1.S1_at--8--691Chr08:23472195..23472219 (25 bp)
ATGACGGAGAGGACACGACCGCCGC
LOC_Os08g37360
OsAffx.17377.1.S1_at--375--7631Chr08:23472094..23472118 (25 bp)
GGGACCACCGGCGACAATGCCTTGG
LOC_Os08g37360
OsAffx.17377.1.S1_at--339--8391Chr08:23472085..23472109 (25 bp)
GGCGACAATGCCTTGGTGCCCGGCT
LOC_Os08g37360
OsAffx.17377.1.S1_at--748--10592Chr08:23472073..23472097 (25 bp)
TTGGTGCCCGGCTCCTGATACCTCG
LOC_Os08g37360
OsAffx.17377.1.S1_at--1029--5179Chr08:2288554..2288574 (21 bp)
GCAAGTATCACCTAATACGTGGTAT
NONE
OsAffx.17377.1.S1_at--610--396Chr05:19877237..19877426 (25 bp)
ATCACCTAATACGTGGTATCACATG
NONE
OsAffx.17377.1.S1_at--795--1912Chr09:22808133..22808244 (24 bp)
ACGTGGTATCACATGATATCTCGCA
NONE
OsAffx.17377.1.S1_at--72--6891Chr08:23471940..23471964 (25 bp)
GTATCACATGATATCTCGCAAATAT
LOC_Os08g37360
OsAffx.17377.1.S1_at--21--4131Chr08:23471924..23471948 (25 bp)
CGCAAATATCGCCTGATACTGGTTA
LOC_Os08g37360
OsAffx.17377.1.S1_at--171--252Chr08:23471919..23471943 (25 bp)
ATATCGCCTGATACTGGTTAGGTAT
LOC_Os08g37360
OsAffx.17377.1.S1_at--712--9913Chr05:29617516..29617540 (25 bp)
TACTGGTTAGGTATCAGGACATGAT
NONE
Target Sequence 
ATGACGGAGAGGACACGACCGCCGCCACTGAGCTCCGACGTGGCGTGGACGGTGGAGGATGCAGCCGCCGGCGACGAGCT
CCGGCGTGAGACGTGGACGATGGGACCACCGGCGACAATGCCTTGGTGCCCGGCTCCTGATACCTCGCAAGTATCACCTA
ATACGTGGTATCACATGATATCTCGCAAATATCGCCTGATACTGGTTAGGTATCAGGACATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis