Browse Element(s) Details


OsAffx.17378.1.S1_at

Description tigr:9636.m03757
TID=OsAffx.17378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3742011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37420OsAffx.17378.1.S1_at11/118+23578430..23578768hypothetical protein
LOC_Os08g37432OsAffx.29571.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37432Os.6517.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37444Os.4838.1.S1_s_at11/118+23584920..23589406Signal recognition particle, alpha subunit, N-terminal family protein, expressed
LOC_Os08g37456Os.11122.1.S1_at11/118+23590772..23594404oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17378.1.S1_at--192--3251Chr08:23578513..23578537 (25 bp)
CAAGCTCGAAATGGTGATGGCGCCG
LOC_Os08g37420
OsAffx.17378.1.S1_at--569--2691Chr08:23578514..23578538 (25 bp)
AAGCTCGAAATGGTGATGGCGCCGA
LOC_Os08g37420
OsAffx.17378.1.S1_at--777--8871Chr08:23578527..23578551 (25 bp)
TGATGGCGCCGAGACGACGCAAGAA
LOC_Os08g37420
OsAffx.17378.1.S1_at--543--8471Chr08:23578530..23578554 (25 bp)
TGGCGCCGAGACGACGCAAGAAGCA
LOC_Os08g37420
OsAffx.17378.1.S1_at--858--1391Chr08:23578538..23578562 (25 bp)
AGACGACGCAAGAAGCAGCGTCACT
LOC_Os08g37420
OsAffx.17378.1.S1_at--552--5791Chr08:23578542..23578566 (25 bp)
GACGCAAGAAGCAGCGTCACTGCCC
LOC_Os08g37420
OsAffx.17378.1.S1_at--655--4491Chr08:23578632..23578656 (25 bp)
GCCGTGACGCTAGTCACCCATCGCT
LOC_Os08g37420
OsAffx.17378.1.S1_at--484--531Chr08:23578651..23578675 (25 bp)
ATCGCTGCCGTTTCTGGCTTTCCGT
LOC_Os08g37420
OsAffx.17378.1.S1_at--293--4511Chr08:23578657..23578681 (25 bp)
GCCGTTTCTGGCTTTCCGTGAGAGA
LOC_Os08g37420
OsAffx.17378.1.S1_at--508--4031Chr08:23578659..23578683 (25 bp)
CGTTTCTGGCTTTCCGTGAGAGAGA
LOC_Os08g37420
OsAffx.17378.1.S1_at--359--10611Chr08:23578662..23578686 (25 bp)
TTCTGGCTTTCCGTGAGAGAGAGAG
LOC_Os08g37420
Target Sequence 
CAAGCTCGAAATGGTGATGGCGCCGAGACGACGCAAGAAGCAGCGTCACTGCCCGCCGCCCCAGCCCGGCGGCCTCCCCT
CAAGCCGCCGCCGTACTGCCCAACGCCCTACTGCCCGCCGCCGTGACGCTAGTCACCCATCGCTGCCGTTTCTGGCTTTC
CGTGAGAGAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis