Browse Element(s) Details


OsAffx.17379.1.S1_at

Description tigr:9636.m03764
TID=OsAffx.17379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3747011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37420OsAffx.17378.1.S1_at11/118+23578430..23578768hypothetical protein
LOC_Os08g37432OsAffx.29571.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37432Os.6517.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37444Os.4838.1.S1_s_at11/118+23584920..23589406Signal recognition particle, alpha subunit, N-terminal family protein, expressed
LOC_Os08g37456Os.11122.1.S1_at11/118+23590772..23594404oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37490Os.18498.1.S1_at10/118+23617494..2361966214-3-3, putative, expressed
LOC_Os08g37520Os.49968.1.S1_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_x_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.1.S2_at10/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_at9/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.54805.2.S1_at1/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37500Os.24493.1.A1_at11/118+23623306..23625301expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17379.1.S1_at--236--4691Chr08:23598857..23598881 (25 bp)
GCGGATCACCTACATGCACATACAC
LOC_Os08g37470
OsAffx.17379.1.S1_at--124--1731Chr08:23598722..23598858 (25 bp)
ACCAGTGCGCCGATTTCTCGATGGG
LOC_Os08g37470
OsAffx.17379.1.S1_at--286--4051Chr08:23598704..23598727 (24 bp)
CGATGGGCGTGTTCTGTTTTCCGGC
LOC_Os08g37470
OsAffx.17379.1.S1_at--56--6811Chr08:23598639..23598663 (25 bp)
GTTTTGAGCAAGCTCCTGTACGGCT
LOC_Os08g37470
OsAffx.17379.1.S1_at--466--8291Chr08:23598618..23598642 (25 bp)
GGCTCGGTTCGAGTCAAGTCGTACG
LOC_Os08g37470
OsAffx.17379.1.S1_at--1133--3171Chr08:23598604..23598628 (25 bp)
CAAGTCGTACGATTGGGTCACCCCG
LOC_Os08g37470
OsAffx.17379.1.S1_at--426--1831Chr08:23598377..23598401 (25 bp)
ACGCGCCGTGCAAGACGTCGGTGCT
LOC_Os08g37470
OsAffx.17379.1.S1_at--492--9191Chr08:23598074..23598095 (22 bp)
TGCCAGGTTTTGCTTTTCTGGAAGA
LOC_Os08g37470
OsAffx.17379.1.S1_at--368--1351Chr08:23598052..23598076 (25 bp)
AGAGACGGACTTGCCGGAGGATTTC
LOC_Os08g37470
OsAffx.17379.1.S1_at--435--6991Chr08:23598010..23598034 (25 bp)
GTACGTCGGCCCAGAGCTTGAGCTT
LOC_Os08g37470
OsAffx.17379.1.S1_at--509--4931Chr08:23597995..23598019 (25 bp)
GCTTGAGCTTGTGGTCGATATGGAT
LOC_Os08g37470
Target Sequence 
GCGGATCACCTACATGCACATACACCAGTGCGCCGATTTCTCGATGGGCGTGTTCTGTTTTCCGGCGGGCGCCACGCTGC
CGCTGCACGACCACCCGGAGATGGTGGTTTTGAGCAAGCTCCTGTACGGCTCGGTTCGAGTCAAGTCGTACGATTGGGTC
ACCCCGCCGCCGCCGTGCTCCAGAAAGAGTGGTTTGGCGAGGGTGGTGGCAGCCGACGAGGTCCGGCACGCGCCGTGCAA
GACGTCGGTGCTGTTCCCGCGGAGCGGCGGCAACATGCACGCGTTCACCGCCGTCACGCCGTGCGCCATCCTCGACGTGC
TCACGCCGCCGTACTCGGAGGAGCTCGGCCGGCCGTCCACCTACTTCAACGACATCCCCATCCCATCTCTGCCAGGTTTT
GCTTTTCTGGAAGAGACGGACTTGCCGGAGGATTTCAGCGTTGCAGGGGCACCGTACGTCGGCCCAGAGCTTGAGCTTGT
GGTCGATATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis