Browse Element(s) Details


Os.24493.1.A1_at

Description gb:CB634459
DB_XREF= gi:29629450
DB_XREF=OSIIEb13P21.r
CLONE=OSIIEb13P21
TID=Os.24493.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24493 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_195712.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3750011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37490Os.18498.1.S1_at10/118+23617494..2361966214-3-3, putative, expressed
LOC_Os08g37520Os.49968.1.S1_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_x_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.1.S2_at10/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_at9/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.54805.2.S1_at1/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37500Os.24493.1.A1_at11/118+23623306..23625301expressed protein
LOC_Os08g37530NANA8+23634567..23640677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37540NANA8+23640993..23643918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37550Os.28943.1.S1_x_at1/118+23646324..23650290retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24493.1.A1_at--213--3071Chr08:23624745..23624769 (25 bp)
AATCTTTGGAGATTGCCAGGGCAGA
LOC_Os08g37500
Os.24493.1.A1_at--109--4431Chr08:23624759..23624783 (25 bp)
GCCAGGGCAGAGAATTCTCAGCTTA
LOC_Os08g37500
Os.24493.1.A1_at--696--3231Chr08:23624828..23624852 (25 bp)
CAAGACTATGAGTCCCTCAAGGTAA
LOC_Os08g37500
Os.24493.1.A1_at--9--2911Chr08:23624846..23624870 (25 bp)
AAGGTAAGCGAGTCTGCGGCACAAA
LOC_Os08g37500
Os.24493.1.A1_at--868--4851Chr08:23624903..23624927 (25 bp)
GCTATGTTCAGTTCAGAGTCGACCA
LOC_Os08g37500
Os.24493.1.A1_at--932--2591Chr08:23624992..23625016 (25 bp)
AACCCAGTTGGAGGATATCAGGAAT
LOC_Os08g37500
Os.24493.1.A1_at--427--7351Chr08:23625087..23625111 (25 bp)
GTGCAATCTAACATCCTTAGACAGC
LOC_Os08g37500
Os.24493.1.A1_at--550--431Chr08:23625133..23625157 (25 bp)
ATCTTTTGCTCTTCAAAGTCGTTCA
LOC_Os08g37500
Os.24493.1.A1_at--754--2851Chr08:23625148..23625172 (25 bp)
AAGTCGTTCACAAGACAGTTGGAAT
LOC_Os08g37500
Os.24493.1.A1_at--805--2991Chr08:23625199..23625223 (25 bp)
AATGATATGCCTTGACTAAACCTTG
LOC_Os08g37500
Os.24493.1.A1_at--297--2371Chr08:23625216..23625240 (25 bp)
AAACCTTGGCGTTGCATGTGTAAAC
LOC_Os08g37500
Target Sequence 
AATCTTTGGAGATTGCCAGGGCAGAGAATTCTCAGCTTAAAGAAGACATATCTGAGAAAGAGAATACCTTACAGAGCATC
ATACAAGACTATGAGTCCCTCAAGGTAAGCGAGTCTGCGGCACAAAGTAGTATTGGAGAATTAAAGGATATGATTGATGC
TATGTTCAGTTCAGAGTCGACCAAAACCTCAGCAGAAGCATCACCCAGAGATACCAAGGGAAATGAGGTGTATTATGACC
ANGAAAGAACCCAGTTGGAGGATATCAGGAATNCTGCGNNGCACAAAAAGAGGACAGTTCTCAGAAAATTTGCTGACATA
ATGAAGAAAAGAAACTCTCAAAGTGCAATCTAACATCCTTAGACAGCAATCAAATACAACTTCAGATTATCTTTTGCTCT
TCAAAGTCGTTCACAAGACAGTTGGAATGCTGAGANTTCAATCTGGCAAACTNAAATGATATGCCTTGACTAAACCTTGG
CGTTGCATGTGTAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24493.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis