Browse Element(s) Details


Os.13501.1.S1_at

Description gb:AK108436.1
DB_XREF= gi:32993645
TID=Os.13501.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0042E19.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B05, full insert sequence.
FL= gb:AK108436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g374801/11Surfeit locus protein 5 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37432OsAffx.29571.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37432Os.6517.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37444Os.4838.1.S1_s_at11/118+23584920..23589406Signal recognition particle, alpha subunit, N-terminal family protein, expressed
LOC_Os08g37456Os.11122.1.S1_at11/118+23590772..23594404oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37490Os.18498.1.S1_at10/118+23617494..2361966214-3-3, putative, expressed
LOC_Os08g37520Os.49968.1.S1_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_x_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.1.S2_at10/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_at9/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.54805.2.S1_at1/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37500Os.24493.1.A1_at11/118+23623306..23625301expressed protein
LOC_Os08g37530NANA8+23634567..23640677retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13501.1.S1_at--818--2051NONE
ACTTGCGTCGATGGTTGCCCGGGAA
NONE
Os.13501.1.S1_at--720--9551NONE
TCTTCTCTCCGGCTTTGGGAGGAAG
NONE
Os.13501.1.S1_at--323--6171Chr10:16698029..16698053 (25 bp)
GAGGATGCTGGTTCAAATACTGAGT
NONE
Os.13501.1.S1_at--998--6111Chr10:16698050..16698074 (25 bp)
GAGTGGCTGAGCAAACATGTACATG
NONE
Os.13501.1.S1_at--1073--7892Chr10:16698105..16698129 (25 bp)
GGTTCTCTGAACATTGTATATTGCT
NONE
Os.13501.1.S1_at--76--2651Chr10:16698135..16698159 (25 bp)
AACCATTTGGCATAGGAGAGTACTG
NONE
Os.13501.1.S1_at--609--7531Chr10:16698162..16698186 (25 bp)
GTGGCAGCCCATGTTTATTTTTTAT
NONE
Os.13501.1.S1_at--158--5251Chr10:16698234..16698258 (25 bp)
GAATCATGCCATATTTCACTTTTTT
NONE
Os.13501.1.S1_at--348--7431Chr10:16698275..16698299 (25 bp)
GTGTATTTGATGCATCAGTAGCAAA
NONE
Os.13501.1.S1_at--347--9591Chr10:16698313..16698337 (25 bp)
TCATGGGCCCATGCTTAATTATCTC
NONE
Os.13501.1.S1_at--585--4331Chr10:16698321..16698345 (25 bp)
CCATGCTTAATTATCTCCTGGCTAA
NONE
Target Sequence 
ACTTGCGTCGATGGTTGCCCGGGAATAAATCAACTCCTCCAGCGGCGTGGAATTTTTCCTCGAGAGGAGGCGGCGGCGCA
ACGAAGACGCGACGGCGGGGGCGGCGCGCGGCGCGCGGCGCGATCCGGAGGCGACGGCGACGGCACGGCGCTCACCTCCG
GCCGCCATCTTCTCTCCGGCTTTGGGAGGAAGGAAGTCTGAGAGGATGCTGGTTCAAATACTGAGTGGCTGAGCAAACAT
GTACATGATGCTGGTTTTGTAAAGGAGCAATAAATGTGGTTCTCTGAACATTGTATATTGCTGATGTAACCATTTGGCAT
AGGAGAGTACTGGTGTGGCAGCCCATGTTTATTTTTTATAGCTTGAAAGGTCACATAAATGCAAATTCTAAGTAGAAATG
TCAAGTGAATCATGCCATATTTCACTTTTTTTTNNAGGCTTCATCAATGTGTATTTGATGCATCAGTAGCAAATGATGCA
TGACGNTCATGGGCCCATGCTTAATTATCTCCTGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis