Browse Element(s) Details


Os.4838.1.S1_s_at

Description gb:AK065513.1
DB_XREF= gi:32975531
TID=Os.4838.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033N04, full insert sequence.
FL= gb:AK065513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3744411/11Signal recognition particle, alpha subunit, N-terminal family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37420OsAffx.17378.1.S1_at11/118+23578430..23578768hypothetical protein
LOC_Os08g37432OsAffx.29571.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37432Os.6517.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37444Os.4838.1.S1_s_at11/118+23584920..23589406Signal recognition particle, alpha subunit, N-terminal family protein, expressed
LOC_Os08g37456Os.11122.1.S1_at11/118+23590772..23594404oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006617biological_processSRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0005737cellular_componentcytoplasm
GO:0005786cellular_componentsignal recognition particle (sensu Eukaryota)
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0003729molecular_functionmRNA binding
GO:0005048molecular_functionsignal sequence binding
GO:0005525molecular_functionGTP binding
GO:0008312molecular_function7S RNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4838.1.S1_s_at--895--3711Chr08:23585467..23585491 (25 bp)
CTACCAGATTGATAGATGGCATCCT
LOC_Os08g37444
Os.4838.1.S1_s_at--705--8831Chr08:23585458..23585482 (25 bp)
TGATAGATGGCATCCTGCTCACCAA
LOC_Os08g37444
Os.4838.1.S1_s_at--34--851Chr08:23585452..23585476 (25 bp)
ATGGCATCCTGCTCACCAAGTTTGA
LOC_Os08g37444
Os.4838.1.S1_s_at--802--9071Chr08:23585443..23585467 (25 bp)
TGCTCACCAAGTTTGACACCATCGA
LOC_Os08g37444
Os.4838.1.S1_s_at--989--3211Chr08:23585436..23585460 (25 bp)
CAAGTTTGACACCATCGACGACAAG
LOC_Os08g37444
Os.4838.1.S1_s_at--105--4091Chr08:23585335..23585445 (25 bp)
CGACGACAAGGTTGGAGCTGCACTT
LOC_Os08g37444
Os.4838.1.S1_s_at--1001--2211Chr08:23585330..23585351 (22 bp)
ACAAGGTTGGAGCTGCACTTTCAAT
LOC_Os08g37444
Os.4838.1.S1_s_at--798--8071Chr08:23585322..23585346 (25 bp)
GGAGCTGCACTTTCAATGGTTTATA
LOC_Os08g37444
Os.4838.1.S1_s_at--267--3211Chr08:23585309..23585333 (25 bp)
CAATGGTTTATATATCTGGAGCTCC
LOC_Os08g37444
Os.4838.1.S1_s_at--383--3451Chr08:23585285..23585309 (25 bp)
CAGTCATGTTCGTTGGCTGTGGTCA
LOC_Os08g37444
Os.4838.1.S1_s_at--161--7131Chr08:23585283..23585307 (25 bp)
GTCATGTTCGTTGGCTGTGGTCAGT
LOC_Os08g37444
Target Sequence 
CTACCAGATTGATAGATGGCATCCTGCTCACCAAGTTTGACACCATCGACGACAAGGTTGGAGCTGCACTTTCAATGGTT
TATATATCTGGAGCTCCAGTCATGTTCGTTGGCTGTGGTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4838.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis