Browse Element(s) Details


Os.49968.1.S2_at

Description gb:AK119458.1
DB_XREF= gi:37989081
TID=Os.49968.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E06, full insert sequence.
FL= gb:AK101503.1 gb:AK119458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3752010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37490Os.18498.1.S1_at10/118+23617494..2361966214-3-3, putative, expressed
LOC_Os08g37520Os.49968.1.S1_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_x_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.1.S2_at10/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_at9/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.54805.2.S1_at1/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37500Os.24493.1.A1_at11/118+23623306..23625301expressed protein
LOC_Os08g37530NANA8+23634567..23640677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37540NANA8+23640993..23643918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37550Os.28943.1.S1_x_at1/118+23646324..23650290retrotransposon protein, putative, unclassified
LOC_Os08g37560NANA8+23651030..23656533retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49968.1.S2_at--629--1411Chr08:23623635..23623659 (25 bp)
AGACAATTACTCTACCTGGACCTGA
LOC_Os08g37520
Os.49968.1.S2_at--1121--5291Chr08:23623612..23623636 (25 bp)
GAAGGAGAACATCTTGTCCATTCAA
LOC_Os08g37520
Os.49968.1.S2_at--991--1691Chr08:23623578..23623602 (25 bp)
AGCCAGCCCAGAATTAGCCGACCAT
LOC_Os08g37520
Os.49968.1.S2_at--517--9131Chr08:23623547..23623571 (25 bp)
TGCGTTCCTCCAAAGTCGTATACTA
LOC_Os08g37520
Os.49968.1.S2_at--1100--5571Chr08:23623467..23623491 (25 bp)
GAAATGGTGGTGTCCGCATACCGGA
LOC_Os08g37520
Os.49968.1.S2_at--715--4851Chr08:23623441..23623465 (25 bp)
GCTACGGTTGCTCCTGGGTATAGAA
LOC_Os08g37520
Os.49968.1.S2_at--74--1191Chr08:23623417..23623441 (25 bp)
AGTAGAGATCATACCGCGTCTTTCG
LOC_Os08g37520
Os.49968.1.S2_at--818--11Chr08:23623342..23623366 (25 bp)
ATTGAAACCGTCCAAACCTCGAGAG
LOC_Os08g37520
Os.49968.1.S2_at--144--2911Chr08:23623212..23623233 (22 bp)
AAGGTTGAGTTGTGCTTCTCTGTCC
LOC_Os08g37520
Os.49968.1.S2_at--1127--2331Chr08:23623152..23623176 (25 bp)
AAAGACGCCAGTTCCTCTAGGTATG
LOC_Os08g37520
Os.49968.1.S2_at--138--411NONE
ATCATCCTATATTGACTACCTGCCT
NONE
Target Sequence 
AGACAATTACTCTACCTGGACCTGAAGGAGAACATCTTGTCCATTCAAGAACCCTGCAGCCAGCCCAGAATTAGCCGACC
ATGCCACCTGCGTTCCTCCAAAGTCGTATACTATGAAACCCAAAATTCTATCAGTAAGATAGAGAAACAGAGAATACGGT
GTTACTCTGAAATGGTGGTGTCCGCATACCGGAGGCTACGGTTGCTCCTGGGTATAGAAGTAGAGATCATACCGCGTCTT
TCGCGTTGCCAGAGGAAGGAGAAGATGAAAAGGCTTATTGAAGAAGGCAAGGAATTGAAACCGTCCAAACCTCGAGAGCC
GCCTTGAAGGTTGAGTTGTGCTTCTCTGTCCTGACCATCGACATCAGCTGGCCCCAGCAGTCAGCCAAAGACGCCAGTTC
CTCTAGGTATGTTTCCTTGTATATATCATCATCCTATATTGACTACCTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49968.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis