Browse Element(s) Details


Os.49968.2.S1_at

Description gb:AK111069.1
DB_XREF= gi:32996278
TID=Os.49968.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E04, full insert sequence.
FL= gb:AK111069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g375209/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37490Os.18498.1.S1_at10/118+23617494..2361966214-3-3, putative, expressed
LOC_Os08g37520Os.49968.1.S1_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_x_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.1.S2_at10/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_at9/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.54805.2.S1_at1/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37500Os.24493.1.A1_at11/118+23623306..23625301expressed protein
LOC_Os08g37530NANA8+23634567..23640677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37540NANA8+23640993..23643918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37550Os.28943.1.S1_x_at1/118+23646324..23650290retrotransposon protein, putative, unclassified
LOC_Os08g37560NANA8+23651030..23656533retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49968.2.S1_at--405--191Chr08:23630151..23630175 (25 bp)
ATTTCTGGTATGCTACACAGATTAC
LOC_Os08g37520
Os.49968.2.S1_at--379--631Chr08:23630142..23630166 (25 bp)
ATGCTACACAGATTACAGTTTCCTT
LOC_Os08g37520
Os.49968.2.S1_at--170--4851Chr08:23630140..23630164 (25 bp)
GCTACACAGATTACAGTTTCCTTTC
LOC_Os08g37520
Os.49968.2.S1_at--1050--6551Chr08:23630132..23630156 (25 bp)
GATTACAGTTTCCTTTCTTACCCAT
LOC_Os08g37520
Os.49968.2.S1_at--762--9851Chr08:23630129..23630153 (25 bp)
TACAGTTTCCTTTCTTACCCATCTT
LOC_Os08g37520
Os.49968.2.S1_at--552--9251Chr08:23630122..23630146 (25 bp)
TCCTTTCTTACCCATCTTCTTTCTT
LOC_Os08g37520
Os.49968.2.S1_at--493--10351NONE
TTTATTGTACTTGGAGTACCAGTGA
NONE
Os.49968.2.S1_at--574--8751NONE
TGTACTTGGAGTACCAGTGAAGGTG
NONE
Os.49968.2.S1_at--775--5311Chr08:23630072..23630096 (25 bp)
GAAGGTGGTGATTGACTGATTTGAA
LOC_Os08g37520
Os.49968.2.S1_at--723--7491Chr08:23630068..23630092 (25 bp)
GTGGTGATTGACTGATTTGAAATTT
LOC_Os08g37520
Os.49968.2.S1_at--751--10471Chr08:23630045..23630069 (25 bp)
TTAAAGTTGATCTGATTCATCCTTC
LOC_Os08g37520
Target Sequence 
ATTTCTGGTATGCTACACAGATTACAGTTTCCTTTCTTACCCATCTTCTTTCTTTTTTTATTGTACTTGGAGTACCAGTG
AAGGTGGTGATTGACTGATTTGAAATTTAAAGTTGATCTGATTCATCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49968.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis