Browse Element(s) Details


OsAffx.17408.1.S1_at

Description tigr:9636.m03900
TID=OsAffx.17408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3869010/11expressed protein
LOC_Os06g039601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38650OsAffx.6073.1.S1_at11/118+24293566..24294862hypothetical protein
LOC_Os08g38660NANA8+24295998..24301351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38670OsAffx.6074.1.S1_at11/118+24309520..24310401hypothetical protein
LOC_Os08g38680OsAffx.6075.1.S1_at10/118+24310867..24314025hypothetical protein
LOC_Os08g38690OsAffx.17408.1.S1_at10/118+24314988..24324204expressed protein
LOC_Os08g38690Os.12614.1.A1_at1/118+24314988..24324204expressed protein
LOC_Os08g38700Os.33471.1.A1_at11/118+24331599..24335037BTB/POZ domain containing protein, expressed
LOC_Os08g38710Os.29825.1.S1_a_at11/118+24342303..24346656Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17408.1.S1_at--472--3611NONE
CATTGGGATCCAAAAATGCGCATGG
NONE
OsAffx.17408.1.S1_at--549--6292Chr08:24322537..24322561 (25 bp)
GATGATAATGTCTCTACAATGGATA
LOC_Os08g38690
OsAffx.17408.1.S1_at--637--9851Chr08:24322551..24322827 (25 bp)
TACAATGGATAAGGATTTGGCACTT
LOC_Os08g38690
OsAffx.17408.1.S1_at--739--2331Chr08:24322834..24322858 (25 bp)
AAAGATGTTTTGCACTACCAGCCAA
LOC_Os08g38690
OsAffx.17408.1.S1_at--864--4732Chr08:24323003..24323027 (25 bp)
GCTGTTTCTGCATGGTTAATCCTGA
LOC_Os08g38690
OsAffx.17408.1.S1_at--980--4991Chr08:24323012..24323035 (24 bp)
GCATGGTTAATCCTGATAATGGTAA
LOC_Os08g38690
OsAffx.17408.1.S1_at--122--10291Chr08:24323405..24323429 (25 bp)
TTTGCCTTTTGGATGTTTTGGAAAG
LOC_Os08g38690
OsAffx.17408.1.S1_at--1009--7511Chr08:24323429..24323453 (25 bp)
GTGGAGCGACTCTAATGACGATGAT
LOC_Os08g38690
OsAffx.17408.1.S1_at--1007--2971Chr08:24323530..24323549 (20 bp)
AATACGTGAAAGCTAGGGAGGCCAA
LOC_Os08g38690
OsAffx.17408.1.S1_at--1088--6751Chr08:24323550..24323961 (25 bp)
GTTAAGGCATATGTACGAGCTCACT
LOC_Os08g38690
OsAffx.17408.1.S1_at--816--6991Chr08:24324104..24324123 (20 bp)
GTACGAGCTCACTGTGATGAGATTT
LOC_Os08g38690
Target Sequence 
CATTGGGATCCAAAAATGCGCATGGGGCCAGATGATAATGTCTCTACAATGGATAAGGATTTGGCACTTAAACTCAAAGA
TGTTTTGCACTACCAGCCAATTTGTGAGAACCATATTTGGTACTATCATCTCAATTTCACTGCAAAGACTAAAGAAGCTG
ATGGTTTAGACTCTACTAGTGACAATCTGTTCTTTGTGGAAGTCAAACGTATGGGAATAGGAAATTATGAAGAAATGTTG
GTCAGCTGTTTCTGCATGGTTAATCCTGATAATGGTAAACCATGTAAAGGTTGTACCAACAATGGAACTGTTGACATGAA
GCACCCTGACACTGATGAATACTTTGCTGGCCACTTGGATGCATATTTGCCTTTTGGATGTTTTGGAAAGTGGAGCGACT
CTAATGACGATGATAAATACGTGAAAGCTAGGGAGGCCAAGTTAAGGCATATGTACGAGCTCACTGTGATGAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis