Browse Element(s) Details


OsAffx.17454.1.S1_s_at

Description tigr:9636.m04191
TID=OsAffx.17454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4129011/11auxin-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41270Os.24424.1.S1_at11/118+25929623..25936998Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os08g41280Os.5193.1.S1_at10/118+25939337..25941934auxin-responsive family protein, putative, expressed
LOC_Os08g41290OsAffx.17454.1.S1_s_at11/118+25953710..25954892auxin-responsive protein, putative, expressed
LOC_Os08g41300OsAffx.27508.111.S1_s_at10/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.8861.1.S1_x_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.53621.1.S1_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41310OsAffx.29616.1.S1_at11/118+25962701..25963716hypothetical protein
LOC_Os08g41320Os.10830.1.S1_at10/118+25970024..25972513Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g41329NANA8+25975379..25975743NA

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0030198biological_processextracellular matrix organization and biogenesis
GO:0005576cellular_componentextracellular region
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0005201molecular_functionextracellular matrix structural constituent
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17454.1.S1_s_at--581--6511Chr08:25954585..25954609 (25 bp)
GATTATTGACAGCTACGTTCCTACG
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--220--6691Chr08:25954601..25954625 (25 bp)
GTTCCTACGTCCTAGTACCATGATT
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--999--6971Chr08:25954615..25954639 (25 bp)
GTACCATGATTAGTGGTGTTCATTG
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--397--8611Chr08:25954628..25954652 (25 bp)
TGGTGTTCATTGATGTTTGCATGAT
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--877--4991Chr08:25954646..25954670 (25 bp)
GCATGATGAATCATTTCTTGAACAA
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--741--10191Chr08:25954672..25954696 (25 bp)
TATTTCCCTACTGTTCTTGTTTCCT
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--782--9911Chr08:25954680..25954704 (25 bp)
TACTGTTCTTGTTTCCTTTCCTCTT
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--810--2291Chr08:25954777..25954801 (25 bp)
AAATGGTTGGTGCACAGCACTTGTT
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--261--5111Chr08:25954793..25954817 (25 bp)
GCACTTGTTGTTAATTCGGCACTAG
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--424--2131Chr08:25954824..25954848 (25 bp)
ACAGTGATTTTACTATTGTTGTACA
LOC_Os08g41290
OsAffx.17454.1.S1_s_at--165--51Chr08:25954838..25954862 (25 bp)
ATTGTTGTACATGCCATTGATCTGG
LOC_Os08g41290
Target Sequence 
GATTATTGACAGCTACGTTCCTACGTCCTAGTACCATGATTAGTGGTGTTCATTGATGTTTGCATGATGAATCATTTCTT
GAACAATTATTTCCCTACTGTTCTTGTTTCCTTTCCTCTTTTTTTTTTCATTTTCTCTTGCTTTTTTTTTGTTATAATTA
GTTTTTCTTTGATTTTTCCATTTGCAATAAAAAAATGGTTGGTGCACAGCACTTGTTGTTAATTCGGCACTAGATTAGTA
CAGTGATTTTACTATTGTTGTACATGCCATTGATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17454.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis