Browse Element(s) Details


OsAffx.17468.1.S1_s_at

Description tigr:9636.m04276
TID=OsAffx.17468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable uridylyl transferase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4208011/11ACT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed
LOC_Os08g42060NANA8+26429662..26430153hypothetical protein
LOC_Os08g42070OsAffx.29628.1.S1_at11/118+26435425..26435929hypothetical protein
LOC_Os08g42080OsAffx.17468.1.S1_s_at11/118+26439536..26442049ACT domain containing protein, expressed
LOC_Os08g42090OsAffx.19542.3.S1_x_at4/118+26448415..26452637retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17468.1.S1_s_at--336--551Chr08:26441789..26441813 (25 bp)
ATCCCTCGGCAACATGATCAGGTCA
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--394--2111Chr08:26441800..26441824 (25 bp)
ACATGATCAGGTCACGGTCGGAGAA
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--300--7791Chr08:26441815..26441839 (25 bp)
GGTCGGAGAAGTTCCTCTACAACCT
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--378--9851Chr08:26441832..26441856 (25 bp)
TACAACCTCGGCCTCATCAGATCGT
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--874--3751Chr08:26441844..26441868 (25 bp)
CTCATCAGATCGTGCTCCTAGTCTA
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--1026--6891Chr08:26441883..26441907 (25 bp)
GTATCATTGAGCGTCATTAACAACT
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--665--3711Chr08:26441906..26441930 (25 bp)
CTAGCTAGTTTGATCATGGCAGTGT
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--378--8271Chr08:26441923..26441947 (25 bp)
GGCAGTGTACTGTAGCTTCTAGCTA
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--1091--3131Chr08:26441958..26441982 (25 bp)
AATTAGCGTCGTGTTCGTTGATCCA
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--792--7191Chr08:26441965..26441989 (25 bp)
GTCGTGTTCGTTGATCCATGTCAAA
LOC_Os08g42080
OsAffx.17468.1.S1_s_at--738--7931Chr08:26441995..26442019 (25 bp)
GGATTAAAATGGGACCTGCTTGATC
LOC_Os08g42080
Target Sequence 
ATCCCTCGGCAACATGATCAGGTCACGGTCGGAGAAGTTCCTCTACAACCTCGGCCTCATCAGATCGTGCTCCTAGTCTA
GATGAGAATAATGAGTATCATTGAGCGTCATTAACAACTAGCTAGTTTGATCATGGCAGTGTACTGTAGCTTCTAGCTAA
GCTAAGCTTAATTAGCGTCGTGTTCGTTGATCCATGTCAAAATCTTGGATTAAAATGGGACCTGCTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17468.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis