Browse Element(s) Details


Os.10394.2.S1_at

Description gb:AK073978.1
DB_XREF= gi:32984001
TID=Os.10394.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076N21, full insert sequence.
FL= gb:AK073978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4203011/11Peroxidase 35 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41970OsAffx.6110.1.S1_at10/118+26394119..26395876hypothetical protein
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed
LOC_Os08g42060NANA8+26429662..26430153hypothetical protein
LOC_Os08g42070OsAffx.29628.1.S1_at11/118+26435425..26435929hypothetical protein
LOC_Os08g42080OsAffx.17468.1.S1_s_at11/118+26439536..26442049ACT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10394.2.S1_at--586--8091Chr08:26414720..26414744 (25 bp)
GGACCCGTCCATGAACAAGGACTAC
LOC_Os08g42030
Os.10394.2.S1_at--874--9531Chr08:26414604..26414628 (25 bp)
TCTACTACTCCAACCTCGTCAATGG
LOC_Os08g42030
Os.10394.2.S1_at--176--1051Chr08:26414556..26414580 (25 bp)
AGGTGCTCTACACCGACGGCGCGTC
LOC_Os08g42030
Os.10394.2.S1_at--736--10551Chr08:26414491..26414515 (25 bp)
TTCTTCGATGCCTTCGTGAGCTCCA
LOC_Os08g42030
Os.10394.2.S1_at--879--10611Chr08:26414479..26414503 (25 bp)
TTCGTGAGCTCCATGGTCAGGCTGG
LOC_Os08g42030
Os.10394.2.S1_at--393--1031Chr08:26414421..26414445 (25 bp)
AGGTCAGGAGAGACTGCACTGCATT
LOC_Os08g42030
Os.10394.2.S1_at--276--5111Chr08:26414406..26414430 (25 bp)
GCACTGCATTCAACCACTAGATGGA
LOC_Os08g42030
Os.10394.2.S1_at--991--2711Chr08:26414381..26414405 (25 bp)
AAGCAGCGGCAGATTGTAATTCAGA
LOC_Os08g42030
Os.10394.2.S1_at--743--6671Chr08:26414351..26414375 (25 bp)
GTTGCTCTGATGAGTTTGATACATA
LOC_Os08g42030
Os.10394.2.S1_at--257--5931Chr08:26414322..26414346 (25 bp)
GAGCTTGATTCTTTTGCATACAGTT
LOC_Os08g42030
Os.10394.2.S1_at--148--1211Chr08:26414290..26414314 (25 bp)
AGTTTGAGTGTGTTTTCTTACTTCT
LOC_Os08g42030
Target Sequence 
GGACCCGTCCATGAACAAGGACTACGCGGCGCAGCTGATGGAGGCGTGCCCGCGCGACGTCGGCAAGACCATCGCCGTCA
ACATGGACCCCGTCAGCCCCATCGTCTTCGACAACGTCTACTACTCCAACCTCGTCAATGGCCTCGGCCTCTTCACCTCC
GACCAGGTGCTCTACACCGACGGCGCGTCGCGGCGCACCGTCGAGGAGTTCGCCGTCAACCAGACCGCCTTCTTCGATGC
CTTCGTGAGCTCCATGGTCAGGCTGGGGAGGCTAGGGGTCAAGGCCGGCAAGGATGGAGAGGTCAGGAGAGACTGCACTG
CATTCAACCACTAGATGGAAAGCAGCGGCAGATTGTAATTCAGAAATGTGTTGCTCTGATGAGTTTGATACATATAATGA
GCTTGATTCTTTTGCATACAGTTTTCCAAAAGTTTGAGTGTGTTTTCTTACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10394.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis