Browse Element(s) Details


Os.12758.1.S1_at

Description gb:AK067802.1
DB_XREF= gi:32977820
TID=Os.12758.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120P05, full insert sequence.
FL= gb:AK061387.1 gb:AK061214.1 gb:AK104251.1 gb:AK067802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4204011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed
LOC_Os08g42060NANA8+26429662..26430153hypothetical protein
LOC_Os08g42070OsAffx.29628.1.S1_at11/118+26435425..26435929hypothetical protein
LOC_Os08g42080OsAffx.17468.1.S1_s_at11/118+26439536..26442049ACT domain containing protein, expressed
LOC_Os08g42090OsAffx.19542.3.S1_x_at4/118+26448415..26452637retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12758.1.S1_at--192--7291Chr08:26423855..26423879 (25 bp)
GTGCCTGTGCTACATCATCCAGCAG
LOC_Os08g42040
Os.12758.1.S1_at--432--2091Chr08:26423844..26423868 (25 bp)
ACATCATCCAGCAGGTGCACGGCGG
LOC_Os08g42040
Os.12758.1.S1_at--642--8171Chr08:26423817..26423841 (25 bp)
GGAACGAGGTCCAGTCGCTCGGCCT
LOC_Os08g42040
Os.12758.1.S1_at--357--2691Chr08:26422453..26422477 (25 bp)
AAGCTCACCGGACTACGCTGTCTTC
LOC_Os08g42040
Os.12758.1.S1_at--370--8371Chr08:26421684..26421708 (25 bp)
GGCGATGGTTTCTGCCGTCTTCTCA
LOC_Os08g42040
Os.12758.1.S1_at--451--571Chr08:26421660..26421684 (25 bp)
ATCCATCTTCTGATCCGTGAAACAA
LOC_Os08g42040
Os.12758.1.S1_at--238--7351Chr08:26421644..26421668 (25 bp)
GTGAAACAAGCTAGTCACCCACCCA
LOC_Os08g42040
Os.12758.1.S1_at--902--8711Chr08:26421594..26421618 (25 bp)
TGTCTCTTGATCTCTACGTCGTTCA
LOC_Os08g42040
Os.12758.1.S1_at--1042--1891Chr08:26421579..26421603 (25 bp)
ACGTCGTTCAGCTTTTACTCTGCAA
LOC_Os08g42040
Os.12758.1.S1_at--487--7391Chr08:26421513..26421537 (25 bp)
GTGATGTGCTACACGAAGATTCGTT
LOC_Os08g42040
Os.12758.1.S1_at--116--6291Chr08:26421486..26421510 (25 bp)
GATGTTGTACTCTTTTGTACCCTGA
LOC_Os08g42040
Target Sequence 
GTGCCTGTGCTACATCATCCAGCAGGTGCACGGCGGCCGGAACGAGGTCCAGTCGCTCGGCCTCCGCTTCGACCGCCTCC
TCGCCATGCCCACCGCCTGCAAGCTCCCCAACGCCAACGTCTCCCTCTGCATCAACCTGCTGCACCTGACCCCAAGCTCA
CCGGACTACGCTGTCTTCGCCAACGCCTCCAAGGCAGCGGCTACGACGCCGTCAAGCACCACCCCGGGGGCGGCGGCGGC
CACCGCCGGCGGCTTCAAGGTTCAGGCGGGGCTCAGCTACGGCGTCGTCGCGGCGGCGATGGTTTCTGCCGTCTTCTCAT
CCATCTTCTGATCCGTGAAACAAGCTAGTCACCCACCCATTTTTCTTTGGGAAAAAATCTTTTCTGTCTCTTGATCTCTA
CGTCGTTCAGCTTTTACTCTGCAAGAAACGAATGCACACTGGATGGATGGATGGATGGTTGGTTTGTGATGTGCTACACG
AAGATTCGTTCTGATGTTGTACTCTTTTGTACCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis