Browse Element(s) Details


Os.53300.1.S1_at

Description gb:AK071880.1
DB_XREF= gi:32981903
TID=Os.53300.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043I23, full insert sequence.
FL= gb:AK071880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4202010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41960OsAffx.17465.1.S1_at10/118+26386299..26388857SRF-type transcription factor family protein, expressed
LOC_Os08g41970OsAffx.6110.1.S1_at10/118+26394119..26395876hypothetical protein
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed
LOC_Os08g42060NANA8+26429662..26430153hypothetical protein
LOC_Os08g42070OsAffx.29628.1.S1_at11/118+26435425..26435929hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53300.1.S1_at--81--7771Chr08:26412209..26412233 (25 bp)
GGTGATGTAAGTCCATAGGTCTTTA
LOC_Os08g42020
Os.53300.1.S1_at--212--4751Chr08:26412256..26412280 (25 bp)
GCTGAACATAGGTTCTCACTACTAT
LOC_Os08g42020
Os.53300.1.S1_at--887--10811Chr08:26412330..26412354 (25 bp)
TTGTGCTGAGTACCACTTTGGTGAA
LOC_Os08g42020
Os.53300.1.S1_at--1052--6251Chr08:26412339..26412363 (25 bp)
GTACCACTTTGGTGAAGTTCAATTA
LOC_Os08g42020
Os.53300.1.S1_at--869--10371Chr08:26412421..26412445 (25 bp)
TTTTCCCTGGTAAAACAGACAGTAG
LOC_Os08g42020
Os.53300.1.S1_at--753--3411Chr08:26412436..26412460 (25 bp)
CAGACAGTAGAATGCAACCTAGGAA
LOC_Os08g42020
Os.53300.1.S1_at--923--5131Chr08:26412449..26412473 (25 bp)
GCAACCTAGGAATGATTGGGAGACT
LOC_Os08g42020
Os.53300.1.S1_at--845--5171Chr08:26412475..26412499 (25 bp)
GAATTTTTTGTCTTAAATGACTGGG
LOC_Os08g42020
Os.53300.1.S1_at--625--5731Chr08:26412493..26412517 (25 bp)
GACTGGGATGTTCTGGTTACTGTAC
LOC_Os08g42020
Os.53300.1.S1_at--1012--6271Chr08:26412521..26412545 (25 bp)
GATGTACTGCTTATGAGTGACTTGT
LOC_Os08g42020
Os.53300.1.S1_at--996--1191NONE
AGTTATAAATTTTCACTCTACTGCC
NONE
Target Sequence 
GGTGATGTAAGTCCATAGGTCTTTAGGATAATTAAGACAGATTTATTGCTGAACATAGGTTCTCACTACTATAAACCACA
ACAATCTGTTGATAGAATTTTTTTTTCTTGATAGAGAAATTTTGTGCTGAGTACCACTTTGGTGAAGTTCAATTAAGCTG
ATTGTGGAAAGAAAATATTGTGATAGAGATGAAAATACATGTTTGGGTTTTGTTTTCCCTGGTAAAACAGACAGTAGAAT
GCAACCTAGGAATGATTGGGAGACTAGAATTTTTTGTCTTAAATGACTGGGATGTTCTGGTTACTGTACATTGATGTACT
GCTTATGAGTGACTTGTAGTTATAAATTTTCACTCTACTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis