Browse Element(s) Details


Os.48148.1.S1_at

Description gb:AK101608.1
DB_XREF= gi:32986817
TID=Os.48148.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052A20, full insert sequence.
FL= gb:AK101608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4201010/11nodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41960OsAffx.17465.1.S1_at10/118+26386299..26388857SRF-type transcription factor family protein, expressed
LOC_Os08g41970OsAffx.6110.1.S1_at10/118+26394119..26395876hypothetical protein
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed
LOC_Os08g42060NANA8+26429662..26430153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48148.1.S1_at--296--5091Chr08:26409438..26409462 (25 bp)
GCACCATAACTCGACATTGCTGGCA
LOC_Os08g42010
Os.48148.1.S1_at--149--9431Chr08:26409490..26409514 (25 bp)
TCGGATGCTACTCAGCCATTGAAGT
LOC_Os08g42010
Os.48148.1.S1_at--572--10671Chr08:26409535..26409559 (25 bp)
TTCCTTTCGTCTCTGATCATGTCTG
LOC_Os08g42010
Os.48148.1.S1_at--318--9631Chr08:26409551..26409575 (25 bp)
TCATGTCTGGGTTCTGCATTGTTGC
LOC_Os08g42010
Os.48148.1.S1_at--529--8911Chr08:26409584..26409608 (25 bp)
TGAGCTTGATCCTCATCTACCGGAC
LOC_Os08g42010
Os.48148.1.S1_at--907--1771Chr08:26409602..26409626 (25 bp)
ACCGGACGAAGATTGTGTACGCCAA
LOC_Os08g42010
Os.48148.1.S1_at--435--1811Chr08:26409620..26409644 (25 bp)
ACGCCAATCTGTATGGGAACCCCAG
LOC_Os08g42010
Os.48148.1.S1_at--1053--2591Chr08:26409703..26409727 (25 bp)
AACGCATATACTACTATCTCGGATT
LOC_Os08g42010
Os.48148.1.S1_at--897--6791Chr08:26409777..26409801 (25 bp)
GTTATCTTCCTTCTGTTTCTGAGAG
LOC_Os08g42010
Os.48148.1.S1_at--990--5311Chr08:26409874..26409898 (25 bp)
GAAGTATCGACGTGTACCGGTGCAC
LOC_Os08g42010
Os.48148.1.S1_at--415--951Chr08:26409990..26410014 (25 bp)
AGGAACATTGTTCTTTCCGGTATGT
NONE
Target Sequence 
GCACCATAACTCGACATTGCTGGCAATGCCTGGNAGATTGCTNGCCATGGCCTCGGATGCTACTCAGCCATTGAAGTGTG
AGGGGGCCATCTGCTTCTTCCTTTCGTCTCTGATCATGTCTGGGTTCTGCATTGTTGCTGCTGTCCTGAGCTTGATCCTC
ATCTACCGGACGAAGATTGTGTACGCCAATCTGTATGGGAACCCCAGGACATGAAGAATATCATCAGTCAAGACCCAGAA
GGAAACNAAATTTATAAATGTTATCAACGCATATACTACTATCTCGGATTTTCANCCCAAGTCCTGTTGATTCGTTGGAG
ANCAGAAGGGTGAAGTTTTGTTATCTTCCTTCTGTTTCTGAGAGGNATTCTTGCGCTATCATAAGTTAATGANGTTATCN
GNGGCTACTGAAAGAACGATCGTTGTTCAGTATCTTGAAGTATCGACGTGTACCGGTGCACGGTGGAGATGTGTTTTGCT
TTTCAACTTTTGCTGTGTAAAAACTTTAAAAATCGCATGTATACATGTACNAATAGCGTTGCTTNGTCCAAGGAGGAACA
TTGTTCTTTCCGGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis