Browse Element(s) Details


Os.51459.1.S1_at

Description gb:AK062854.1
DB_XREF= gi:32972872
TID=Os.51459.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A07, full insert sequence.
FL= gb:AK062854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4199011/11Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41950Os.4153.1.S1_a_at11/118+26374337..26379418SRF-type transcription factor family protein, expressed
LOC_Os08g41960OsAffx.17465.1.S1_at10/118+26386299..26388857SRF-type transcription factor family protein, expressed
LOC_Os08g41970OsAffx.6110.1.S1_at10/118+26394119..26395876hypothetical protein
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0006779biological_processporphyrin biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0042538biological_processhyperosmotic salinity response
GO:0009507cellular_componentchloroplast
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
GO:0042286molecular_functionglutamate-1-semialdehyde 2,1-aminomutase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51459.1.S1_at--441--7891Chr08:26400855..26400879 (25 bp)
GGTTACTCCATTACTTGCGGCATTT
LOC_Os08g41990
Os.51459.1.S1_at--856--9131Chr08:26400840..26400864 (25 bp)
TGCGGCATTTCTGTGACTGCGAATT
LOC_Os08g41990
Os.51459.1.S1_at--1160--8891Chr08:26400814..26400838 (25 bp)
TGAGATGACGCTCGTTTGCGCTCCA
LOC_Os08g41990
Os.51459.1.S1_at--462--10711Chr08:26400799..26400823 (25 bp)
TTGCGCTCCATTGATGGGACCTGTT
LOC_Os08g41990
Os.51459.1.S1_at--258--3231Chr08:26400754..26400778 (25 bp)
CAAGATGGCGGTGTTTCTTCGTTCA
LOC_Os08g41990
Os.51459.1.S1_at--650--10611Chr08:26400737..26400761 (25 bp)
TTCGTTCATGCCAGCGATGCGATAT
LOC_Os08g41990
Os.51459.1.S1_at--576--7831Chr08:26400627..26400651 (25 bp)
GGTCAACTGTGTTCGTAGTCCAGGT
LOC_Os08g41990
Os.51459.1.S1_at--980--1551Chr08:26400571..26400595 (25 bp)
AGCTAGACACTGCATCAATCATTTA
LOC_Os08g41990
Os.51459.1.S1_at--363--6831Chr08:26400520..26400544 (25 bp)
GTTTCAAAGTACATGGTCCCTAGAG
LOC_Os08g41990
Os.51459.1.S1_at--609--10411Chr08:26400356..26400380 (25 bp)
TTATTATGCACTTAACCATCCCCTT
LOC_Os08g41990
Os.51459.1.S1_at--200--9811Chr08:26400344..26400368 (25 bp)
TAACCATCCCCTTAGATTCATGTTT
LOC_Os08g41990
Target Sequence 
GGTTACTCCATTACTTGCGGCATTTCTGTGACTGCGAATTGTGAGATGACGCTCGTTTGCGCTCCATTGATGGGACCTGT
TCTTGGGTTGAAATTGGTGGGCAAGATGGCGGTGTTTCTTCGTTCATGCCAGCGATGCGATATGTGGGGTATAGTCGGGT
GGAATTTCAGTTATGTTTTGGATGGGAACCATGGGCTGTGAGAGTTGGACAATGTGAGCTTTTGGCAAGGTCAACTGTGT
TCGTAGTCCAGGTTGTTAGATTAAGATGGACATATATCATAGACAGCTAGACACTGCATCAATCATTTAGGTAATATTCA
AGCAAACAAAAACTAGTTTCAAAGTACATGGTCCCTAGAGAGTACATCTATGAATCTATGATGATTTTACCATCCCAATT
TGGATCATGATCTTGATGGGTGTATTGGTTATCGAAGGCACAATTGCCATAATTAATAGAACTGAATAATGTAAAATTCC
TATATATAAATTTCCAGGCTTATTATGCACTTAACCATCCCCTTAGATTCATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis