Browse Element(s) Details

Os.4153.1.S1_a_at

Description

gb:U78891.2
DB_XREF= gi:33304375
GEN=MADS7
TID=Os.4153.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4153 (NCBI UniGene Cluster)
DEF=Oryza sativa MADS box protein (MADS7) mRNA, complete cds.
PROD=MADS box protein
FL= gb:AK100263.1 gb:U78891.2 gb:AY332477.1 gb:U31994.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g41950	11/11	SRF-type transcription factor family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g41920	Os.40855.2.S1_x_at	8/11	8	+	26351194..26352800	hypothetical protein
LOC_Os08g41920	Os.40855.4.S1_x_at	2/11	8	+	26351194..26352800	hypothetical protein
LOC_Os08g41930	Os.40855.5.S1_x_at	1/11	8	+	26354418..26355038	hypothetical protein
LOC_Os08g41940	Os.56157.1.A1_at	11/11	8	+	26368324..26373375	teosinte glume architecture 1, putative, expressed
LOC_Os08g41940	OsAffx.2442.1.S1_x_at	1/11	8	+	26368324..26373375	teosinte glume architecture 1, putative, expressed
LOC_Os08g41950	Os.4153.1.S1_a_at	11/11	8	+	26374337..26379418	SRF-type transcription factor family protein, expressed
LOC_Os08g41960	OsAffx.17465.1.S1_at	10/11	8	+	26386299..26388857	SRF-type transcription factor family protein, expressed
LOC_Os08g41970	OsAffx.6110.1.S1_at	10/11	8	+	26394119..26395876	hypothetical protein
LOC_Os08g41980	NA	NA	8	+	26397475..26397696	hypothetical protein
LOC_Os08g41990	Os.51459.1.S1_at	11/11	8	+	26398553..26401231	Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990	Os.10144.1.S1_at	11/11	8	+	26398553..26401231	Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000	Os.11535.1.S1_at	10/11	8	+	26402370..26404462	Nuclear transport factor 2, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0001708	biological_process	cell fate specification
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0009908	biological_process	flower development
GO:0010076	biological_process	maintenance of floral meristem identity
GO:0010093	biological_process	specification of floral organ identity
GO:0048440	biological_process	carpel development
GO:0048441	biological_process	petal development
GO:0048442	biological_process	sepal development
GO:0048443	biological_process	stamen development
GO:0048481	biological_process	ovule development
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4153.1.S1_a_at--355--657	1	Chr08:26377883..26377907 (25 bp)	GATTCATCCCTGAAGCACGTCAGAA	LOC_Os08g41950
Os.4153.1.S1_a_at--277--857	1	Chr08:26378302..26378326 (25 bp)	TGGTTGACCAACTGACGGAGCTTCA	LOC_Os08g41950
Os.4153.1.S1_a_at--196--235	1	Chr08:26378758..26378782 (25 bp)	AAAGCAACCATGTTCGCGGGCAGCA	LOC_Os08g41950
Os.4153.1.S1_a_at--753--501	1	Chr08:26378792..26378816 (25 bp)	GCAGGGCTGCAACTTAATTGGCTAT	LOC_Os08g41950
Os.4153.1.S1_a_at--325--67	1	Chr08:26378815..26378839 (25 bp)	ATGAACGTCAGCCTGAAGTGCAGCA	LOC_Os08g41950
Os.4153.1.S1_a_at--657--297	1	Chr08:26378856..26378880 (25 bp)	AATGGGTTCTTCCATCCACTTGATG	LOC_Os08g41950
Os.4153.1.S1_a_at--20--735	1	Chr08:26378887..26378911 (25 bp)	GTGAACCCACCCTTCAGATTGGGTA	LOC_Os08g41950
Os.4153.1.S1_a_at--454--661	1	Chr08:26378903..26379125 (25 bp)	GATTGGGTACCCTGCAGAGCATCAT	LOC_Os08g41950
Os.4153.1.S1_a_at--372--867	1	Chr08:26379229..26379253 (25 bp)	TGTGGTGCCGCATACATGCATGTAT	LOC_Os08g41950
Os.4153.1.S1_a_at--747--905	1	Chr08:26379245..26379269 (25 bp)	TGCATGTATCATGGCTAGCTACTTA	LOC_Os08g41950
Os.4153.1.S1_a_at--225--121	1	Chr08:26379292..26379316 (25 bp)	AGTTTCGTATGTAGCCTGTTTGTGT	LOC_Os08g41950

Target Sequence

GATTCATCCCTGAAGCACGTCAGAACTACAAGGACAAAACATCTGGTTGACCAACTGACGGAGCTTCAGAGAAAGGAACA
AATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAACTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGC
AGGGCTGCAACTTAATTGGCTATGAACGTCAGCCTGAAGTGCAGCAGCCTCTTCACGGCGGCAATGGGTTCTTCCATCCA
CTTGATGCTGCTGGTGAACCCACCCTTCAGATTGGGTACCCTGCAGAGCATCATGAGGCGATGAACAGTGCGTGCATGAA
CACCTACATGCCCCCATGGCTACCATGATGATGACGGGGACAATGAATTACGAAATAACAAGGATATGTGGCATATATGT
GGTGCCGCATACATGCATGTATCATGGCTAGCTACTTAATTGGAGTGATGGATTTGAACTAGTTTCGTATGTAGCCTGTT
TGTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis