Browse Element(s) Details


OsAffx.17513.1.S1_at

Description tigr:9636.m04533
TID=OsAffx.17513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4446010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed
LOC_Os08g44440Os.12998.1.S1_at11/118+27826616..27830199Multiple myeloma tumor-associated protein 2 homolog, putative, expressed
LOC_Os08g44450Os.12334.1.S1_x_at11/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44450Os.12334.2.S1_at5/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44460Os.12405.1.S1_at11/118+27833353..27835109expressed protein
LOC_Os08g44460OsAffx.17513.1.S1_at10/118+27833353..27835109expressed protein
LOC_Os08g44470OsAffx.6135.1.S1_s_at11/118+27835512..27837858expressed protein
LOC_Os08g44480Os.33777.1.S1_at11/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44480OsAffx.29659.2.S1_s_at10/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44490NANA8+27846694..27849986retrotransposon protein, putative, unclassified
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified
LOC_Os08g44510Os.27475.1.S1_at10/118+27858716..27866582gibberellin action negative regulator SPY, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042030molecular_functionATPase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17513.1.S1_at--260--1891Chr08:27833602..27833753 (25 bp)
ACGTCTACGTCCAGAAGATGGAGAG
LOC_Os08g44460
OsAffx.17513.1.S1_at--14--4531NONE
GCCGCCTCCGACAAGGAAATTTTGT
NONE
OsAffx.17513.1.S1_at--192--171Chr08:27834371..27834395 (25 bp)
ATTTTGTGGATTTTCGTCCCAAATG
LOC_Os08g44460
OsAffx.17513.1.S1_at--162--7251Chr08:27834386..27834410 (25 bp)
GTCCCAAATGGGACTTGGGCATGTA
LOC_Os08g44460
OsAffx.17513.1.S1_at--720--3611Chr08:27834399..27834423 (25 bp)
CTTGGGCATGTAGTTGCAGCAGATT
LOC_Os08g44460
OsAffx.17513.1.S1_at--973--5051Chr08:27834414..27834438 (25 bp)
GCAGCAGATTTTCGCTTGCACCTGG
LOC_Os08g44460
OsAffx.17513.1.S1_at--26--4911Chr08:27834427..27834451 (25 bp)
GCTTGCACCTGGCAACTTACTAGAG
LOC_Os08g44460
OsAffx.17513.1.S1_at--622--2051Chr08:27834441..27834465 (25 bp)
ACTTACTAGAGGGAAACATTGACAA
LOC_Os08g44460
OsAffx.17513.1.S1_at--1087--5611Chr08:27834461..27834485 (25 bp)
GACAAAGCAAAATCCTCTAATGTGT
LOC_Os08g44460
OsAffx.17513.1.S1_at--1--571Chr08:27834472..27834496 (25 bp)
ATCCTCTAATGTGTCTTGGGCGCAA
LOC_Os08g44460
OsAffx.17513.1.S1_at--134--7451Chr08:27834482..27834506 (25 bp)
GTGTCTTGGGCGCAAAAATGCAGAA
LOC_Os08g44460
Target Sequence 
ACGTCTACGTCCAGAAGATGGAGAGGGAGAGGATGGAGAAGCGCAAGAAGAAGCTCGAGAAGGAGAAGGCGGAGGCAGAC
AAGGGCAATCCCGCCGCCTCCGACAAGGAAATTTTGTGGATTTTCGTCCCAAATGGGACTTGGGCATGTAGTTGCAGCAG
ATTTTCGCTTGCACCTGGCAACTTACTAGAGGGAAACATTGACAAAGCAAAATCCTCTAATGTGTCTTGGGCGCAAAAAT
GCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis