Browse Element(s) Details


OsAffx.17596.1.S1_at

Description tigr:9637.m00557
TID=OsAffx.17596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NOI protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g079209/11nitrate-induced NOI protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07900Os.16069.2.S1_s_at11/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07900Os.54014.1.S1_x_at10/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07900Os.16069.1.S1_at9/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07900Os.52150.1.S1_at2/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07900Os.52150.1.S1_x_at1/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07910OsAffx.32332.1.S1_x_at6/119+4036616..4037693DNA-directed RNA polymerase alpha chain, putative
LOC_Os09g07910OsAffx.32331.1.S1_x_at3/119+4036616..4037693DNA-directed RNA polymerase alpha chain, putative
LOC_Os09g07920OsAffx.17596.1.S1_at9/119+4041760..4044191nitrate-induced NOI protein, putative, expressed
LOC_Os09g07930OsAffx.17598.1.S1_at10/119+4062778..4067524hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010167biological_processresponse to nitrate
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17596.1.S1_at--1066--2611NONE
AACCGAACAGTTCCGCAATTCTGGT
NONE
OsAffx.17596.1.S1_at--815--1231NONE
AGTTCCGCAATTCTGGTGATTTCAT
NONE
OsAffx.17596.1.S1_at--344--7411Chr09:4043828..4043852 (25 bp)
GTGATTTCATTTACCTTGCAAGTCC
LOC_Os09g07920
OsAffx.17596.1.S1_at--783--9971Chr09:4043839..4043863 (25 bp)
TACCTTGCAAGTCCATAAGTGTTTG
LOC_Os09g07920
OsAffx.17596.1.S1_at--75--3571Chr09:4043852..4044026 (25 bp)
CATAAGTGTTTGGTTGATAGTGCAA
LOC_Os09g07920
OsAffx.17596.1.S1_at--115--291Chr09:4044018..4044042 (25 bp)
ATAGTGCAAGGGAACAGGTTATCCT
LOC_Os09g07920
OsAffx.17596.1.S1_at--161--5491Chr09:4044029..4044053 (25 bp)
GAACAGGTTATCCTGAAACATAACT
LOC_Os09g07920
OsAffx.17596.1.S1_at--87--2411Chr09:4044044..4044068 (25 bp)
AAACATAACTTTACTCCTGCAACTC
LOC_Os09g07920
OsAffx.17596.1.S1_at--486--2071Chr09:4044046..4044070 (25 bp)
ACATAACTTTACTCCTGCAACTCTT
LOC_Os09g07920
OsAffx.17596.1.S1_at--785--5151Chr09:4044062..4044086 (25 bp)
GCAACTCTTGCATTGGAATGCTTTT
LOC_Os09g07920
OsAffx.17596.1.S1_at--867--4931Chr09:4044071..4044094 (24 bp)
GCATTGGAATGCTTTTTTAACTTGA
LOC_Os09g07920
Target Sequence 
AACCGAACAGTTCCGCAATTCTGGTGATTTCATTTACCTTGCAAGTCCATAAGTGTTTGGTTGATAGTGCAAGGGAACAG
GTTATCCTGAAACATAACTTTACTCCTGCAACTCTTGCATTGGAATGCTTTTTTAACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis