Browse Element(s) Details


OsAffx.17605.1.S1_at

Description tigr:9637.m00612
TID=OsAffx.17605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0841011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08390Os.12140.1.S1_a_at11/119+4348564..4354179CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g08400OsAffx.6205.1.S1_at11/119+4358015..4359123hypothetical protein
LOC_Os09g08410OsAffx.17605.1.S1_at11/119+4377766..4378171hypothetical protein
LOC_Os09g08420Os.12648.1.S1_at11/119+4381994..4385627Protein kinase G11A, putative, expressed
LOC_Os09g08430Os.9941.1.S1_at11/119+4389880..439287260S ribosomal protein L17, putative, expressed
LOC_Os09g08440OsAffx.25952.1.S1_s_at2/119+4400212..4406611MtN3/saliva family protein
LOC_Os09g08440OsAffx.29755.5.S1_x_at1/119+4400212..4406611MtN3/saliva family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17605.1.S1_at--1108--9971Chr09:4378110..4378134 (25 bp)
TAGCCGTCCCCGTTGCAAGGTCATC
LOC_Os09g08410
OsAffx.17605.1.S1_at--443--2011Chr09:4378079..4378103 (25 bp)
ACTCTATGCAGTCAACATCACCACA
LOC_Os09g08410
OsAffx.17605.1.S1_at--320--2091Chr09:4378065..4378089 (25 bp)
ACATCACCACATCACATAGTCGTTC
LOC_Os09g08410
OsAffx.17605.1.S1_at--398--2091Chr09:4378057..4378081 (25 bp)
ACATCACATAGTCGTTCCGTCACTT
LOC_Os09g08410
OsAffx.17605.1.S1_at--179--391Chr09:4378055..4378079 (25 bp)
ATCACATAGTCGTTCCGTCACTTCT
LOC_Os09g08410
OsAffx.17605.1.S1_at--996--271Chr09:4378050..4378074 (25 bp)
ATAGTCGTTCCGTCACTTCTCGCTT
LOC_Os09g08410
OsAffx.17605.1.S1_at--130--6711Chr09:4378044..4378068 (25 bp)
GTTCCGTCACTTCTCGCTTCGTGCA
LOC_Os09g08410
OsAffx.17605.1.S1_at--1048--10611Chr09:4377819..4378051 (25 bp)
TTCGTGCACCCTCGATGCAAACTGA
LOC_Os09g08410
OsAffx.17605.1.S1_at--1046--7331Chr09:4377816..4378048 (25 bp)
GTGCACCCTCGATGCAAACTGATTA
LOC_Os09g08410
OsAffx.17605.1.S1_at--879--4031Chr09:4377807..4377827 (21 bp)
CGATGCAAACTGATTAACGATAACT
LOC_Os09g08410
OsAffx.17605.1.S1_at--103--6551Chr09:4377796..4377820 (25 bp)
GATTAACGATAACTACAGTCCTATC
LOC_Os09g08410
Target Sequence 
TAGCCGTCCCCGTTGCAAGGTCATCGCCACCACTCTATGCAGTCAACATCACCACATCACATAGTCGTTCCGTCACTTCT
CGCTTCGTGCACCCTCGATGCAAACTGATTAACGATAACTACAGTCCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis