Browse Element(s) Details


Os.12648.1.S1_at

Description gb:AK070835.1
DB_XREF= gi:32980858
TID=Os.12648.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075E03, full insert sequence.
FL= gb:AK070835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0842011/11Protein kinase G11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08400OsAffx.6205.1.S1_at11/119+4358015..4359123hypothetical protein
LOC_Os09g08410OsAffx.17605.1.S1_at11/119+4377766..4378171hypothetical protein
LOC_Os09g08420Os.12648.1.S1_at11/119+4381994..4385627Protein kinase G11A, putative, expressed
LOC_Os09g08430Os.9941.1.S1_at11/119+4389880..439287260S ribosomal protein L17, putative, expressed
LOC_Os09g08440OsAffx.25952.1.S1_s_at2/119+4400212..4406611MtN3/saliva family protein
LOC_Os09g08440OsAffx.29755.5.S1_x_at1/119+4400212..4406611MtN3/saliva family protein
LOC_Os09g08450Os.44324.1.A1_at11/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450OsAffx.29755.3.S1_x_at7/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450OsAffx.29755.4.S1_x_at6/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450OsAffx.29755.3.S1_at5/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450OsAffx.29755.2.S1_x_at4/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12648.1.S1_at--618--8131Chr09:4382525..4382549 (25 bp)
GGACAGTCCCTAAGGTTCCCAGAAT
LOC_Os09g08420
Os.12648.1.S1_at--676--9671Chr09:4382501..4382525 (25 bp)
TCACCTGTTGTGAGTTTTGCTGCAA
LOC_Os09g08420
Os.12648.1.S1_at--1005--8171Chr09:4382448..4382472 (25 bp)
GGAACCACAACATCGTTTGGCTTAT
LOC_Os09g08420
Os.12648.1.S1_at--1072--9771Chr09:4382362..4382386 (25 bp)
TAAGGTGTGCAACTCCTCCAGATAT
LOC_Os09g08420
Os.12648.1.S1_at--576--2651Chr09:4382333..4382357 (25 bp)
AAGCCAGTTGAGATCCCTAGGTCAG
LOC_Os09g08420
Os.12648.1.S1_at--1054--7091Chr09:4382313..4382337 (25 bp)
GTCAGTAGCCTCAACCAGTCAAAAG
LOC_Os09g08420
Os.12648.1.S1_at--795--10271Chr09:4382183..4382207 (25 bp)
TTTCCTAGACCTTTTCTGGATTCTT
LOC_Os09g08420
Os.12648.1.S1_at--596--8831Chr09:4382152..4382176 (25 bp)
TGATATTCAGTTGGCCTATGCTCCC
LOC_Os09g08420
Os.12648.1.S1_at--1078--8531Chr09:4382096..4382120 (25 bp)
TGGACCTCCATCAATCGCATTAGAT
LOC_Os09g08420
Os.12648.1.S1_at--601--6251Chr09:4382069..4382093 (25 bp)
GATGGGAGACCTTTCTGTTTAGAAC
LOC_Os09g08420
Os.12648.1.S1_at--534--8751Chr09:4382054..4382078 (25 bp)
TGTTTAGAACCTGTAATCCTCCTTT
LOC_Os09g08420
Target Sequence 
GGACAGTCCCTAAGGTTCCCAGAATCACCTGTTGTGAGTTTTGCTGCAAAGGACCTTATTCGGGGTTTGCTTATTAAGGA
ACCACAACATCGTTTGGCTTATAAGCGTGGAGCGACAGAAATAAAGCAACATCCCTTTTTTGAAGGTGTTAACTGGGCCT
TGATAAGGTGTGCAACTCCTCCAGATATTCCCAAGCCAGTTGAGATCCCTAGGTCAGTAGCCTCAACCAGTCAAAAGGCT
ACAACAACTGCTGAGAAAGGTTCAGACAATTATCTTGAATTCGATTTCTTTTAGTGGAGTCTTATAAAATCATTTATGTG
CAAGTTGTAAAGTTCTTTTCTTTTTCCTAGACCTTTTCTGGATTCTTATAACTTGATATTCAGTTGGCCTATGCTCCCAT
TTCTGTTCTTAANTTCCTTTTGCATTTCGTGGACCTCCATCAATCGCATTAGATTAGATGGGAGACCTTTCTGTTTAGAA
CCTGTAATCCTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis