Browse Element(s) Details


OsAffx.17696.1.S1_at

Description tigr:9637.m01182
TID=OsAffx.17696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1470011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14680Os.9598.1.S1_at11/119+8709148..8715891expressed protein
LOC_Os09g14690Os.27639.1.S1_x_at8/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14690OsAffx.8980.1.S1_at5/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14690OsAffx.5632.1.A1_at1/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14700OsAffx.17696.1.S1_at11/119+8726043..8728679expressed protein
LOC_Os09g14710OsAffx.16443.1.S1_at1/119+8735817..8738888retrotransposon protein, putative, unclassified
LOC_Os09g14720OsAffx.20387.1.S1_x_at1/119+8739696..8745772retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g14730NANA9+8749518..8753915retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17696.1.S1_at--597--1491Chr09:8727233..8727257 (25 bp)
AGCACAATCTGTACGCTCTTGGAGA
LOC_Os09g14700
OsAffx.17696.1.S1_at--773--2671Chr09:8727186..8727210 (25 bp)
AAGCGGTTTTTCATTCGAGCACCAC
LOC_Os09g14700
OsAffx.17696.1.S1_at--748--2391Chr09:8726860..8726884 (25 bp)
AAACTTCTATATGGTACCGTGCATG
LOC_Os09g14700
OsAffx.17696.1.S1_at--104--1311Chr09:8726399..8726423 (25 bp)
AGATGTCTGCACCATGCGGCGCAAT
LOC_Os09g14700
OsAffx.17696.1.S1_at--660--3531Chr09:8726387..8726411 (25 bp)
CATGCGGCGCAATGGTTATTCAACC
LOC_Os09g14700
OsAffx.17696.1.S1_at--1034--7611Chr09:8726352..8726376 (25 bp)
GGGAACATCCATGCTTTCAAAGCCA
LOC_Os09g14700
OsAffx.17696.1.S1_at--164--7331Chr09:8726318..8726342 (25 bp)
GTGCTATCCTGGACATCTTATCACC
LOC_Os09g14700
OsAffx.17696.1.S1_at--61--10431Chr09:8726301..8726325 (25 bp)
TTATCACCTCCTTATTCTTCAGAAG
LOC_Os09g14700
OsAffx.17696.1.S1_at--981--1311Chr09:8726278..8726302 (25 bp)
AGATGGAAGGCATTGCTCCTACTTC
LOC_Os09g14700
OsAffx.17696.1.S1_at--267--9231Chr09:8726262..8726286 (25 bp)
TCCTACTTCCGCAGATGCCGAAAAG
LOC_Os09g14700
OsAffx.17696.1.S1_at--670--2331Chr09:8726150..8726265 (25 bp)
AAAGCAGACCCGTCGGGCATTTTAT
LOC_Os09g14700
Target Sequence 
AGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGGAAAGCGGTTTTTCATTCGAGCACCACAATCAGAT
ATCGTCACATATATGAGTGCAAAAATTTCTCGATTGGAATATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAAC
CATCCAGGCATGACTGTATTCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGGGTTGAGGATACAAC
TCAACTGCTTAAATTATCAAAAGTTAGACCTGCCAAGATTGTAAGGGATGGTGAGATGTCTGCACCATGCGGCGCAATGG
TTATTCAACCAAAAGATGGGGGGAACATCCATGCTTTCAAAGCCATCACCCCCTGTGCTATCCTGGACATCTTATCACCT
CCTTATTCTTCAGAAGATGGAAGGCATTGCTCCTACTTCCGCAGATGCCGAAAAGCAGACCCGTCGGGCATTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis