Browse Element(s) Details


OsAffx.17733.2.S1_at

Description tigr:9637.m01350
TID=OsAffx.17733.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1618010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16130Os.57144.1.S1_at11/119+9838416..9838921expressed protein
LOC_Os09g16140OsAffx.17731.1.S1_at11/119+9842456..9842881hypothetical protein
LOC_Os09g16150OsAffx.29868.2.S1_at11/119+9848245..9849101hypothetical protein
LOC_Os09g16150OsAffx.12311.1.S1_x_at1/119+9848245..9849101hypothetical protein
LOC_Os09g16160OsAffx.17733.1.S1_at11/119+9856201..9859809hypothetical protein
LOC_Os09g16170OsAffx.29869.1.S1_at11/119+9860268..9861866hypothetical protein
LOC_Os09g16180OsAffx.17733.2.S1_at10/119+9863112..9864236hypothetical protein
LOC_Os09g16190OsAffx.17734.1.S1_at9/119+9874701..9875672hypothetical protein
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17733.2.S1_at--49--9371Chr09:9863151..9863175 (25 bp)
TCGACTTCCTCGAGGGTGGCGCAAT
LOC_Os09g16180
OsAffx.17733.2.S1_at--1026--1051Chr09:9863163..9863187 (25 bp)
AGGGTGGCGCAATTGGCCACATCTT
LOC_Os09g16180
OsAffx.17733.2.S1_at--1123--3171Chr09:9863173..9863197 (25 bp)
AATTGGCCACATCTTCCTTGACGGT
LOC_Os09g16180
OsAffx.17733.2.S1_at--251--4371Chr09:9863179..9863203 (25 bp)
CCACATCTTCCTTGACGGTGGCGCA
LOC_Os09g16180
OsAffx.17733.2.S1_at--852--4091NONE
CGACGATGGCATTGTACAAGGGCAA
NONE
OsAffx.17733.2.S1_at--247--2811Chr09:9863907..9863931 (25 bp)
AAGATCATCACAAAGGACCAGTACT
LOC_Os09g16180
OsAffx.17733.2.S1_at--114--2931Chr09:9863919..9863943 (25 bp)
AAGGACCAGTACTCAAGCAGCAGGT
LOC_Os09g16180
OsAffx.17733.2.S1_at--566--1011Chr09:9863940..9863964 (25 bp)
AGGTTGGCCAGCTTGGTCACGGCAT
LOC_Os09g16180
OsAffx.17733.2.S1_at--260--8451Chr09:9863944..9863968 (25 bp)
TGGCCAGCTTGGTCACGGCATTTGC
LOC_Os09g16180
OsAffx.17733.2.S1_at--653--6671Chr09:9864125..9864149 (25 bp)
GTTGCTGTCACTGACGAAGGACATT
LOC_Os09g16180
OsAffx.17733.2.S1_at--710--5791Chr09:9864137..9864161 (25 bp)
GACGAAGGACATTCTCTCTGGCGTG
LOC_Os09g16180
Target Sequence 
TCGACTTCCTCGAGGGTGGCGCAATTGGCCACATCTTCCTTGACGGTGGCGCAGCACGACGGCGATGGCCTCTCGCCCTC
GACGATGGCATTGTACAAGGGCAATACAAAGATCATCACAAAGGACCAGTACTCAAGCAGCAGGTTGGCCAGCTTGGTCA
CGGCATTTGCACTGGGGATGTACATGGTGCTGGCTCCGGTGGATGCCAAGACTGGCATTGCCGTCTGCGTGCTCAGCCCC
TTCACTATGCTGTACAGAAACAAGGGACGCCTTCAGAAGCTCTATGCACTCGCTGGACCGTTGTATATCAGAATGGGGCT
TTGGGCGTTGCTGTCACTGACGAAGGACATTCTCTCTGGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17733.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis