Browse Element(s) Details


OsAffx.17749.1.S1_at

Description tigr:9637.m01421
TID=OsAffx.17749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1685011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16790NANA9+10262361..10265405transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16800OsAffx.17748.1.S1_at11/119+10269182..10269600hypothetical protein
LOC_Os09g16810OsAffx.29877.1.S1_at11/119+10271653..10272957F-box domain containing protein
LOC_Os09g16820OsAffx.29130.2.S1_x_at11/119+10274870..10275205hypothetical protein
LOC_Os09g16830NANA9+10277418..10279355retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16840NANA9+10279917..10281191retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16850OsAffx.17749.1.S1_at11/119+10286472..10288597BTB/POZ domain containing protein
LOC_Os09g16860NANA9+10294411..10301773retrotransposon protein, putative, unclassified
LOC_Os09g16870OsAffx.29878.1.S1_at11/119+10305222..10306406BTB/POZ domain containing protein
LOC_Os09g16880Os.46306.1.S1_x_at2/119+10309955..10313081transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17749.1.S1_at--991--1171Chr09:10287018..10287042 (25 bp)
AGTACTCTCACCGACGTATGCTTCG
LOC_Os09g16850
OsAffx.17749.1.S1_at--966--5751Chr09:10287030..10287054 (25 bp)
GACGTATGCTTCGACGTCGATGGCG
LOC_Os09g16850
OsAffx.17749.1.S1_at--1055--4051Chr09:10287047..10287071 (25 bp)
CGATGGCGAGAGGTTCAACGCGCAC
LOC_Os09g16850
OsAffx.17749.1.S1_at--117--7431Chr09:10287099..10287123 (25 bp)
GTGTTCAGGAGCTTGCTGTTCGGCT
LOC_Os09g16850
OsAffx.17749.1.S1_at--1070--1391Chr09:10287142..10287166 (25 bp)
AGACGGAGACCGCAGTCGTCACCAT
LOC_Os09g16850
OsAffx.17749.1.S1_at--957--5731Chr09:10287261..10287285 (25 bp)
GACGGCGAGGCAGACCATGTCACGA
LOC_Os09g16850
OsAffx.17749.1.S1_at--549--7791Chr09:10287445..10287469 (25 bp)
GGTCGTGCCTCGAGTTCCTGTCCAA
LOC_Os09g16850
OsAffx.17749.1.S1_at--104--8711Chr09:10287463..10287487 (25 bp)
TGTCCAACACGCAGATTTACTCGGT
LOC_Os09g16850
OsAffx.17749.1.S1_at--206--1231Chr09:10287475..10287499 (25 bp)
AGATTTACTCGGTGGCGACCAACGA
LOC_Os09g16850
OsAffx.17749.1.S1_at--947--8471Chr09:10287487..10287511 (25 bp)
TGGCGACCAACGACGAGTGCTACGA
LOC_Os09g16850
OsAffx.17749.1.S1_at--384--8611Chr09:10287514..10287538 (25 bp)
TGGTGCAGAGCTACCCGGACGTGCT
LOC_Os09g16850
Target Sequence 
AGTACTCTCACCGACGTATGCTTCGACGTCGATGGCGAGAGGTTCAACGCGCACCGCCTGGTGATGGCGGCGCAGTCGGA
GGTGTTCAGGAGCTTGCTGTTCGGCTCCGATGACGCCGAGACCAAGACGGAGACCGCAGTCGTCACCATCGACGGCATCA
GCGCCACCACCTTCAAGCACATGCTCCACTACATCTACTGCAACCAGCTACCGCCACCGGCCACCGGCGACGGTGACGAC
GATGACGGCGAGGCAGACCATGTCACGAGGATCGCCGAGCTGCAGCGGCTGCTCGTCGCGGCCGACGCGTACGGGGTGGA
GGCGCTGAGGCAGGCGTGCGAGGACACGCTGTGCGCCGGGATCAACATGGACACGGTCGCCTCGACGCTGGCGCTGACGG
AGAAGGGGTCGTACCCGAAGCTGAGGGGGTCGTGCCTCGAGTTCCTGTCCAACACGCAGATTTACTCGGTGGCGACCAAC
GACGAGTGCTACGAGGTGGTGCAGAGCTACCCGGACGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis