Browse Element(s) Details


OsAffx.29877.1.S1_at

Description tigr:9637.m01417
TID=OsAffx.29877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1681011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16760Os.56077.1.S1_x_at11/119+10251138..10253760expressed protein
LOC_Os09g16760Os.53655.1.A1_at10/119+10251138..10253760expressed protein
LOC_Os09g16770NANA9+10255260..10256571transposon protein, putative, unclassified
LOC_Os09g16780Os.38113.1.S2_at3/119+10259561..10261220hypothetical protein
LOC_Os09g16790NANA9+10262361..10265405transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16800OsAffx.17748.1.S1_at11/119+10269182..10269600hypothetical protein
LOC_Os09g16810OsAffx.29877.1.S1_at11/119+10271653..10272957F-box domain containing protein
LOC_Os09g16820OsAffx.29130.2.S1_x_at11/119+10274870..10275205hypothetical protein
LOC_Os09g16830NANA9+10277418..10279355retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16840NANA9+10279917..10281191retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16850OsAffx.17749.1.S1_at11/119+10286472..10288597BTB/POZ domain containing protein
LOC_Os09g16860NANA9+10294411..10301773retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29877.1.S1_at--94--2151Chr09:10272369..10272393 (25 bp)
ACAGAGACATTTCGATGCCGACGCC
LOC_Os09g16810
OsAffx.29877.1.S1_at--824--3111Chr09:10272438..10272462 (25 bp)
AATATACGGCGTTGTGTTCGCTCTC
LOC_Os09g16810
OsAffx.29877.1.S1_at--708--8951Chr09:10272491..10272515 (25 bp)
TGACATTGCCCAAGTGCTGCGCCAG
LOC_Os09g16810
OsAffx.29877.1.S1_at--296--9891Chr09:10272532..10272556 (25 bp)
TACTACCGCCAGTGGAACCTGCGTG
LOC_Os09g16810
OsAffx.29877.1.S1_at--891--8591Chr09:10272596..10272620 (25 bp)
TGGTGCAGCACAGCGACCTAGAGGT
LOC_Os09g16810
OsAffx.29877.1.S1_at--114--1251Chr09:10272686..10272710 (25 bp)
AGTTGATCACGCGTGGCTTGCCCGA
LOC_Os09g16810
OsAffx.29877.1.S1_at--17--3791Chr09:10272730..10272754 (25 bp)
CTCGTCGAGAGGTTAACTGGCGTCA
LOC_Os09g16810
OsAffx.29877.1.S1_at--626--1951Chr09:10272745..10272769 (25 bp)
ACTGGCGTCAAGATCCTGGAGGTGA
LOC_Os09g16810
OsAffx.29877.1.S1_at--276--811Chr09:10272769..10272793 (25 bp)
ATGGGACGATCCGTCGTGCTGACTC
LOC_Os09g16810
OsAffx.29877.1.S1_at--424--5851Chr09:10272837..10272861 (25 bp)
GACCATGGAGCTCGAGCACGTGTAT
LOC_Os09g16810
OsAffx.29877.1.S1_at--840--9191Chr09:10272881..10272905 (25 bp)
TCCAGAAGTGGGTGTTCCCCGTCAA
LOC_Os09g16810
Target Sequence 
ACAGAGACATTTCGATGCCGACGCCATGCACTTCGCCGGACGCGCCGGCGGCTCCCTCTACTGGGGGACAATATACGGCG
TTGTGTTCGCTCTCGACGAGAGCACCGGCGAGCTCTCGCCGCTGACATTGCCCAAGTGCTGCGCCAGCGAACAACCCCGG
TTCTACTACCGCCAGTGGAACCTGCGTGCCGTCGGCGATGATGCCGGAGGAGGGCGCCTCGTCCGAGTGGTGCAGCACAG
CGACCTAGAGGTGCTGACGCCGCTCCACGCTGGCGGCGGCAGGGAGTGGACGGTGGAGAAGACGCTCCGGCTGCCGGAGT
TGATCACGCGTGGCTTGCCCGAGCTGGAAGACTACAGCCGCCTCGTCGAGAGGTTAACTGGCGTCAAGATCCTGGAGGTG
ATGGGACGATCCGTCGTGCTGACTCCGCCGGAGGGGTCGGGGATGTGGCCCTTCTCCGTCGACCTCGAGACCATGGAGCT
CGAGCACGTGTATGACTGGGGCGACGAACTGGTCCAGAAGTGGGTGTTCCCCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis