Browse Element(s) Details


Os.53655.1.A1_at

Description gb:AK073765.1
DB_XREF= gi:32983788
TID=Os.53655.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070B14, full insert sequence.
FL= gb:AK073765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1676010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16720OsAffx.17747.1.S1_at10/119+10228039..10228354hypothetical protein
LOC_Os09g16729Os.37916.1.S1_at3/119+10232559..10233300NA
LOC_Os09g16740NANA9+10240972..10244215hypothetical protein
LOC_Os09g16750NANA9+10245898..10246495retrotransposon protein, putative, unclassified
LOC_Os09g16760Os.56077.1.S1_x_at11/119+10251138..10253760expressed protein
LOC_Os09g16760Os.53655.1.A1_at10/119+10251138..10253760expressed protein
LOC_Os09g16770NANA9+10255260..10256571transposon protein, putative, unclassified
LOC_Os09g16780Os.38113.1.S2_at3/119+10259561..10261220hypothetical protein
LOC_Os09g16790NANA9+10262361..10265405transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16800OsAffx.17748.1.S1_at11/119+10269182..10269600hypothetical protein
LOC_Os09g16810OsAffx.29877.1.S1_at11/119+10271653..10272957F-box domain containing protein
LOC_Os09g16820OsAffx.29130.2.S1_x_at11/119+10274870..10275205hypothetical protein
LOC_Os09g16830NANA9+10277418..10279355retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53655.1.A1_at--1134--7131Chr09:10253174..10253198 (25 bp)
GTCTTGGCCATCACATTTGCATTCG
LOC_Os09g16760
Os.53655.1.A1_at--38--2831Chr09:10253247..10253271 (25 bp)
AAGTTGACTACAGCATCCGCTTGGA
LOC_Os09g16760
Os.53655.1.A1_at--794--8531Chr09:10253268..10253292 (25 bp)
TGGAGCACCTTAACTCGGCCAATAG
LOC_Os09g16760
Os.53655.1.A1_at--634--8591Chr09:10253295..10253319 (25 bp)
TGGTCTGGCTATCAATCAGGTGCTT
LOC_Os09g16760
Os.53655.1.A1_at--1095--1011Chr09:10253338..10253362 (25 bp)
AGGTTTATACGTTGTCCTGGCACCA
LOC_Os09g16760
Os.53655.1.A1_at--122--10431Chr09:10253385..10253409 (25 bp)
TTATCTGCCTCATGTGTTCCGTTGG
LOC_Os09g16760
Os.53655.1.A1_at--811--8991Chr09:10253433..10253457 (25 bp)
TGAAGACACAGATCCGCATGGCCGT
LOC_Os09g16760
Os.53655.1.A1_at--809--4991Chr09:10253448..10253472 (25 bp)
GCATGGCCGTGCTCTTACAGGGAAG
LOC_Os09g16760
Os.53655.1.A1_at--649--8451Chr09:10253537..10253561 (25 bp)
TGGCCCTTCCTGATTATCTTTGGTT
LOC_Os09g16760
Os.53655.1.A1_at--305--771Chr09:10253624..10253648 (25 bp)
ATGTCGTATTTGTACCGCTGATCAC
LOC_Os09g16760
Os.53655.1.A1_at--41--9911NONE
TACTGTATTGTGTACCGTTCTGGGA
NONE
Target Sequence 
GTCTTGGCCATCACATTTGCATTCGTCTACTCCTTGTTGGCTACATTTAGCCTCGTGTATTCAGGAATGACCAAAGTTGA
CTACAGCATCCGCTTGGAGCACCTTAACTCGGCCAATAGCTTGGTCTGGCTATCAATCAGGTGCTTGCTAGCTGCATTTG
CATTAGGTTTATACGTTGTCCTGGCACCAGTTGCTCACAAGACTGCCTTGCTTATCTGCCTCATGTGTTCCGTTGGGTTA
TTGCACGGGCATACGTCAATGAAGACACAGATCCGCATGGCCGTGCTCTTACAGGGAAGGATTGGGTTTAAGGTGTGGTG
GATTTTGGGCAGGAAGATACTTCGAAACTTTCTGCACTCATTTTGGCCCTTCCTGATTATCTTTGGTTGGCCAGCTTATC
TGAAATGGAGGCACCAACAGTAGTTAGACTCATATATATGACCACCAAATATGTCGTATTTGTACCGCTGATCACCATAG
ATTGTATTTCTTATAGTATCCCTTTTGCNATTGTGATTTTGTTTCTATGGTGACAACATACTGTATTGTGTACCGTTCTG
GGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53655.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis