Browse Element(s) Details


OsAffx.17752.1.S1_at

Description tigr:9637.m01451
TID=OsAffx.17752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1710011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17050OsAffx.6311.1.S1_at11/119+10450160..10452082hypothetical protein
LOC_Os09g17060OsAffx.17750.1.S1_at11/119+10453365..10453628hypothetical protein
LOC_Os09g17070OsAffx.6312.1.S1_at11/119+10460248..10461402hypothetical protein
LOC_Os09g17080NANA9+10462222..10463181F-box domain containing protein
LOC_Os09g17089NANA9+10467745..10469297NA
LOC_Os09g17100OsAffx.17752.1.S1_at11/119+10472904..10473604hypothetical protein
LOC_Os09g17110OsAffx.29884.1.S1_at11/119+10476590..10481004Protein kinase domain containing protein
LOC_Os09g17120OsAffx.29885.1.S1_at11/119+10486855..10488821hypothetical protein
LOC_Os09g17120Os.27811.1.S1_at1/119+10486855..10488821hypothetical protein
LOC_Os09g17130OsAffx.17753.1.S1_at11/119+10492871..10494993hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17752.1.S1_at--543--10151Chr09:10473009..10473033 (25 bp)
TATCCCGGTGCACATCTCTAAAATA
LOC_Os09g17100
OsAffx.17752.1.S1_at--396--191Chr09:10473099..10473123 (25 bp)
ATTTCTTGTGATCTGCGAGTTTGTT
LOC_Os09g17100
OsAffx.17752.1.S1_at--1067--7391Chr09:10473142..10473166 (25 bp)
GTGATTTAACCACAAACGCTGATGT
LOC_Os09g17100
OsAffx.17752.1.S1_at--265--7951Chr09:10473192..10473216 (25 bp)
GGATATTGACATACCAGCTTCAGAT
LOC_Os09g17100
OsAffx.17752.1.S1_at--294--10831Chr09:10473218..10473242 (25 bp)
TTGTGCTGCATTTTCTTGAACCAAT
LOC_Os09g17100
OsAffx.17752.1.S1_at--960--9231Chr09:10473242..10473266 (25 bp)
TCCATACATCAGTTTTGCACACCTA
LOC_Os09g17100
OsAffx.17752.1.S1_at--392--7231Chr09:10473271..10473295 (25 bp)
GTCCCAAATTGGCATTTCCTCAAGC
LOC_Os09g17100
OsAffx.17752.1.S1_at--1015--191Chr09:10473284..10473308 (25 bp)
ATTTCCTCAAGCAGGATGCCAGCGA
LOC_Os09g17100
OsAffx.17752.1.S1_at--422--7851Chr09:10473322..10473346 (25 bp)
GGTACCTGCATACCTGGGCATGCTT
LOC_Os09g17100
OsAffx.17752.1.S1_at--1105--6931Chr09:10473357..10473381 (25 bp)
GTAGTCTTGTCCCAGGTGCTCTGTA
LOC_Os09g17100
OsAffx.17752.1.S1_at--891--1011Chr09:10473529..10473553 (25 bp)
AGGTAGTGTCCGTTGTGTTCAGGTA
LOC_Os09g17100
Target Sequence 
TATCCCGGTGCACATCTCTAAAATAGCAACCTCAGGAATTTTGCTGGAGCACATTTGAACATTAAGTGATCAGGCTATAT
TGCATAATATATTTCTTGTGATCTGCGAGTTTGTTGGTAAAAATTTCTTTGATGTGATTTAACCACAAACGCTGATGTGC
AGAGATAAAGACATAGGTAATAAGGATATTGACATACCAGCTTCAGATATTGTGCTGCATTTTCTTGAACCAATCCATAC
ATCAGTTTTGCACACCTAGGCCGTCCCAAATTGGCATTTCCTCAAGCAGGATGCCAGCGAGAAAACATATGCAGGTACCT
GCATACCTGGGCATGCTTGATGTGGGTGGTAGTCTTGTCCCAGGTGCTCTGTACAACAGAGTTTGGAGGATGGAGTTGTC
GAGCTGTGAAGTCCATGAAGATAGAGGTTCCAGATTTGGTCTGTATAGAAGGATTCATCTCAACACAGTGCAAATTAGGA
GAGAAAAATACATCATGACAGATTACCTGTTCAAGTGGGGAGGTAGTGTCCGTTGTGTTCAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis