Browse Element(s) Details


OsAffx.17779.1.S1_x_at

Description tigr:9637.m01627
TID=OsAffx.17779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to RPM1 like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1933011/11Stripe rust resistance protein Yr10, putative
LOC_Os09g193102/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19280NANA9+11539746..11542435retrotransposon protein, putative, unclassified
LOC_Os09g19290NANA9+11542985..11549253retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19300NANA9+11549879..11552815retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19310OsAffx.17779.1.S1_x_at2/119+11553937..11555179retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19310OsAffx.17779.1.S1_at1/119+11553937..11555179retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19320OsAffx.6329.1.S1_at11/119+11558552..11559102hypothetical protein
LOC_Os09g19330OsAffx.17779.1.S1_x_at11/119+11562901..11564176Stripe rust resistance protein Yr10, putative
LOC_Os09g19330OsAffx.17779.1.S1_at11/119+11562901..11564176Stripe rust resistance protein Yr10, putative
LOC_Os09g19340OsAffx.29922.1.S1_at11/119+11566994..11568754hypothetical protein
LOC_Os09g19350Os.27174.1.A1_at2/119+11575043..11581853Protein kinase domain containing protein, expressed
LOC_Os09g19360OsAffx.29921.2.S1_at9/119+11586115..11587841Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17779.1.S1_x_at--481--9371Chr09:11564097..11564121 (25 bp)
TCGACGAGCAGGTCAAGCTTTGGGC
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--359--4572Chr09:11564074..11564098 (25 bp)
GCGCGCGACGTCAGGGAGCTCTCCT
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--898--5752Chr09:11564038..11564062 (25 bp)
GACGTCCTCGACACCTTCATGGTGC
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--578--5611Chr09:11563996..11564020 (25 bp)
GACAACCACGGCTCCAAAGGGATGG
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--240--7391Chr09:11563972..11563996 (25 bp)
GTGATGAACAAGGTGGCCGGCTTCC
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--645--8391Chr09:11563959..11563983 (25 bp)
TGGCCGGCTTCCTCCGGAAGGCCAA
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--287--8211Chr09:11563944..11563968 (25 bp)
GGAAGGCCAAGACGCGCCACGACAT
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--853--3251Chr09:11563907..11563931 (25 bp)
CAACGGCATCATGGACCTAACGAGC
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--754--8271Chr09:11563903..11563927 (25 bp)
GGCATCATGGACCTAACGAGCGATC
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--558--831Chr09:11563897..11563921 (25 bp)
ATGGACCTAACGAGCGATCAGCCGC
LOC_Os09g19330
OsAffx.17779.1.S1_x_at--337--1751Chr09:11563893..11563917 (25 bp)
ACCTAACGAGCGATCAGCCGCGCGG
LOC_Os09g19330
Target Sequence 
TCGACGAGCAGGTCAAGCTTTGGGCGCGCGACGTCAGGGAGCTCTCCTACGACGCCGACGACGTCCTCGACACCTTCATG
GTGCGCGAGCGCGTCGACGACGACAACCACGGCTCCAAAGGGATGGTGATGAACAAGGTGGCCGGCTTCCTCCGGAAGGC
CAAGACGCGCCACGACATCACCGACGAGATCAACGGCATCATGGACCTAACGAGCGATCAGCCGCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17779.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis