Browse Element(s) Details


OsAffx.17781.1.S1_x_at

Description tigr:9637.m01641
TID=OsAffx.17781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1947011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19430NANA9+11624499..11629753transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19440OsAffx.17780.1.S1_at10/119+11637039..11638060hypothetical protein
LOC_Os09g19450OsAffx.32056.1.S1_x_at7/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.3.S1_s_at6/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.4.S1_s_at5/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.1.S1_s_at3/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.32056.1.S1_at2/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19460NANA9+11647556..11647918hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_x_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19480OsAffx.17782.1.S1_at11/119+11660025..11660862hypothetical protein
LOC_Os09g19490OsAffx.29924.1.S1_at11/119+11661543..11661995hypothetical protein
LOC_Os09g19500OsAffx.17783.1.S1_s_at11/119+11663441..11666859leucine-rich repeat protein kinase, putative
LOC_Os09g19500OsAffx.17783.1.S1_at9/119+11663441..11666859leucine-rich repeat protein kinase, putative
LOC_Os09g19510Os.53875.1.S1_at7/119+11670312..11675422Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17781.1.S1_x_at--161--6251Chr09:11654442..11654466 (25 bp)
GATGGAGTCTTACATTACAGCTCAA
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--390--491Chr09:11654408..11654432 (25 bp)
ATCTGGTTGAAAGTTGCCAATGTTT
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--296--6691Chr09:11654396..11654420 (25 bp)
GTTGCCAATGTTTATGTGATTCCTG
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--1152--771Chr09:11654383..11654407 (25 bp)
ATGTGATTCCTGATCGTATTGAAAT
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--411--7411Chr09:11654381..11654405 (25 bp)
GTGATTCCTGATCGTATTGAAATTG
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--1050--10491Chr09:11654327..11654351 (25 bp)
TTCAAAGCACGAAATATTATTCTTA
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--238--171Chr09:11654312..11654336 (25 bp)
ATTATTCTTAATGGGATCTCTCGCT
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--1127--10211Chr09:11654310..11654334 (25 bp)
TATTCTTAATGGGATCTCTCGCTCC
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--761--10551Chr09:11654308..11654332 (25 bp)
TTCTTAATGGGATCTCTCGCTCCGA
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--218--9771Chr09:11654304..11654328 (25 bp)
TAATGGGATCTCTCGCTCCGATTTT
LOC_Os09g19470
OsAffx.17781.1.S1_x_at--1014--6811Chr09:11654273..11654297 (25 bp)
GTTTCTCATCTTGCAACTACTAATG
LOC_Os09g19470
Target Sequence 
GATGGAGTCTTACATTACAGCTCAAGACTATGATATCTGGTTGAAAGTTGCCAATGTTTATGTGATTCCTGATCGTATTG
AAATTGCTACTCAAAATACTGATTTTGAAAACAATTTCAAAGCACGAAATATTATTCTTAATGGGATCTCTCGCTCCGAT
TTTGATCGTGTTTCTCATCTTGCAACTACTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17781.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis