Browse Element(s) Details


OsAffx.17783.1.S1_s_at

Description tigr:9637.m01644
TID=OsAffx.17783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative protein kinase - partial sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1950011/11leucine-rich repeat protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19450OsAffx.32056.1.S1_x_at7/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.3.S1_s_at6/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.4.S1_s_at5/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.1.S1_s_at3/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.32056.1.S1_at2/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19460NANA9+11647556..11647918hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_x_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19480OsAffx.17782.1.S1_at11/119+11660025..11660862hypothetical protein
LOC_Os09g19490OsAffx.29924.1.S1_at11/119+11661543..11661995hypothetical protein
LOC_Os09g19500OsAffx.17783.1.S1_s_at11/119+11663441..11666859leucine-rich repeat protein kinase, putative
LOC_Os09g19500OsAffx.17783.1.S1_at9/119+11663441..11666859leucine-rich repeat protein kinase, putative
LOC_Os09g19510Os.53875.1.S1_at7/119+11670312..11675422Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19520Os.24942.4.A1_x_at6/119+11679927..11680334hypothetical protein
LOC_Os09g19520Os.24942.4.A1_at2/119+11679927..11680334hypothetical protein
LOC_Os09g19530NANA9+11682894..11689049transposon protein, putative, unclassified
LOC_Os09g19540NANA9+11689688..11692924transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17783.1.S1_s_at--121--3571Chr09:11666345..11666369 (25 bp)
CATACGATCGGTACTGGTGGGCAGA
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--382--9191Chr09:11666401..11666425 (25 bp)
TCCAAACGGGACATCCAGCCGGAAT
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--291--1671Chr09:11666417..11666441 (25 bp)
AGCCGGAATCCATCACGGAGGTGCC
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--464--7831Chr09:11666448..11666472 (25 bp)
GGTACTCCAAAAGGCCGTCCAAGTG
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--846--1911Chr09:11666480..11666504 (25 bp)
ACGGCAGGATGCTCAACATTACATG
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--407--471Chr09:11666522..11666546 (25 bp)
ATCTCCAGGTCACGGTGTTTCTGCA
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--124--8971Chr09:11666604..11666628 (25 bp)
TGACAAGCCGTATCTGTACAGCCCA
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--385--9531Chr09:11666651..11666675 (25 bp)
TCTACAGCCCCAGTTGGTATGGTGA
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--609--6071Chr09:11666686..11666710 (25 bp)
GAGTTCAATGTCACTCTTGTGGCCA
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--351--9731Chr09:11666738..11666762 (25 bp)
TCAATGCATACGAGATCTACACCCC
LOC_Os09g19500
OsAffx.17783.1.S1_s_at--171--1951Chr09:11666776..11666800 (25 bp)
ACTCCCATGACTTTTTCCAAAGACG
LOC_Os09g19500
Target Sequence 
CATACGATCGGTACTGGTGGGCAGAGGACAGTAACCCAATGTGGGGTTATCTTAACTCCAAACGGGACATCCAGCCGGAA
TCCATCACGGAGGTGCCCTCCGCGGTACTCCAAAAGGCCGTCCAAGTGGCTGGGAACGGCAGGATGCTCAACATTACATG
GGAAGGCAACACGCCCGATCTCCAGGTCACGGTGTTTCTGCATTTCGCTGACTTCCAGAAAAGCCAGCCCCGTCAGTTCA
ACATCTACTTCAACAGCTATGACAAGCCGTATCTGTACAGCCCATCATACCTGGCCGCTGGGGTCGTCTACAGCCCCAGT
TGGTATGGTGAGAGCGATGGAGAGTTCAATGTCACTCTTGTGGCCACTGCCAAGTCCGTGCTGCTGCCGATGCTCAATGC
ATACGAGATCTACACCCCCATCAAGCATAAAACTCCCATGACTTTTTCCAAAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17783.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis